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meme
•
reset
0
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793
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.4 years ago
rbronste
▴ 60
1
vote
2
replies
1.2k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
rbronste
▴ 60
0
votes
0
replies
692
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.2 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.2 years ago by
Ou, Jianhong
★ 1.3k • written 6.2 years ago by
lmolla
▴ 10
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.2 years ago
enricoferrero
▴ 660
0
votes
0
replies
1.4k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.3 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
3.8k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
vinod.acear
▴ 50
7 results • Page
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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