Showing : memory problem • reset
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split champ.load for large number of samples
memory problem champ.load
7.0 years ago petra.lenzini • 0
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DESeq2 memory allocation question
deseq2 memory problem
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 60
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
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ProcessAmplicons using very little memory on big job?
edgeR processamplicons memory problem
7.3 years ago sdalin • 0
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GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem gaia
updated 7.9 years ago by ▴ 40 • written 7.9 years ago by • 0
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 840
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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