Showing : memory problem • reset
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split champ.load for large number of samples
memory problem champ.load
6.1 years ago petra.lenzini • 0
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1.1k
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DESeq2 memory allocation question
deseq2 memory problem
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 60
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
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984
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ProcessAmplicons using very little memory on big job?
edgeR processamplicons memory problem
6.4 years ago sdalin • 0
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3
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1.9k
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GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem gaia
updated 7.1 years ago by ▴ 40 • written 7.1 years ago by • 0
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 7.7 years ago by 67k • written 7.7 years ago by ▴ 840
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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