Biostar Memory problem

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259

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memory problem champ.load

3.6 years ago petra.lenzini • 0

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487

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deseq2 memory problem

updated 3.7 years ago by Michael Love 37k • written 3.7 years ago by rbronste ▴ 60

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454

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big data methylmix memory problem

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by perdedorium • 0

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452

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edgeR processamplicons memory problem

4.0 years ago sdalin • 0

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1.0k

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memory problem gaia

updated 4.6 years ago by Sandro Morganella ▴ 40 • written 4.6 years ago by drusmanbashir • 0

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1.2k

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oligo hta2.0 affymetrix microarrays memory problem

updated 5.2 years ago by James W. MacDonald 60k • written 5.2 years ago by svlachavas ▴ 800

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Comment: Alternative for wininet method in tximeta by uhlkatie • 0

This worked perfectly. Thank you!

Answer: Limma beta coefficient confidence intervals by James W. MacDonald 60k

see ?topTable. You can simply add confint = TRUE

Answer: Confused about the CPM and TMM normalization in edgeR by Gordon Smyth 45k

There's no such thing as TMM normalized counts, as the edgeR document tells you. This link might help: https://www.biostars.org/p/9475236/

Comment: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe, by pcantalupo • 0

It worked...thank you Aaron

Comment: Alternative for wininet method in tximeta by Michael Love 37k

I think you can then change the `?options` > download.file.method: > Method to be used for download.file. Currently download methods "i…

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Answer: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe,

Comment: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe,

A: Retrieve canonical transcript for each gene via ensembldb R package

A: Samples without pair in paired design experiment

A: weird model design for DE analysis

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Teacher to Gordon Smyth 45k