Showing : memory problem • reset
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GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem gaia
updated 8.1 years ago by ▴ 40 • written 8.1 years ago by • 0
2
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3
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2.1k
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 840
1
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2
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1.5k
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
0
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4
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1.4k
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DESeq2 memory allocation question
deseq2 memory problem
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 60
0
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1
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1.2k
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ProcessAmplicons using very little memory on big job?
edgeR processamplicons memory problem
7.5 years ago sdalin • 0
0
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0
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859
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split champ.load for large number of samples
memory problem champ.load
7.2 years ago petra.lenzini • 0
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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