Bioconductor Memory problem

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memory problem gaia

updated 7.4 years ago by Sandro Morganella ▴ 40 • written 7.4 years ago by drusmanbashir • 0

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oligo hta2.0 affymetrix microarrays memory problem

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by svlachavas ▴ 840

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big data methylmix memory problem

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by perdedorium • 0

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deseq2 memory problem

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by rbronste ▴ 60

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edgeR processamplicons memory problem

6.8 years ago sdalin • 0

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memory problem champ.load

6.5 years ago petra.lenzini • 0

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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k