Bioconductor Meta analysis

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microarray meta analysis

5.9 years ago lily ▴ 20

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875

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microarray microarray data Meta Analysis platform

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Jamal • 0

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1.6k

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microarray meta analysis cancer Software R

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Jamal • 0

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896

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MAMA pvalcombination meta analysis metaMA DEGs' indices

7.7 years ago niteshkumar20sept • 0

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meta analysis

8.1 years ago lily ▴ 20

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limma camera cohen d meta analysis

8.9 years ago Andy91 ▴ 60

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1.7k

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rnaseq metaseq clc output pvalue meta analysis

updated 9.0 years ago by Koki ▴ 10 • written 9.0 years ago by hassangiahi • 0

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2.4k

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annotation genesymbols meta analysis

9.8 years ago wahaha123 • 0

8 results • Page 1 of 1

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Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

I think that some historical context will help here. Aaron Lun was a PhD student in my Lab back in 2015, and the analysis approach that he …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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