Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
meta analysis
•
reset
0
votes
0
replies
910
views
metaDE R and RRA R
microarray
meta analysis
4.4 years ago
lily
▴ 20
0
votes
1
reply
601
views
Meta_analysis of microarray data
microarray
microarray data
Meta Analysis
platform
updated 5.3 years ago by
James W. MacDonald
66k • written 5.3 years ago by
Jamal
• 0
0
votes
1
reply
1.2k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
Jamal
• 0
0
votes
0
replies
618
views
how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA
pvalcombination
meta analysis
metaMA
DEGs' indices
6.1 years ago
niteshkumar20sept
• 0
0
votes
1
reply
786
views
meta de r package
meta analysis
6.6 years ago
lily
▴ 20
1
vote
0
replies
1.1k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.3 years ago
Andy91
▴ 60
0
votes
1
reply
1.3k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 7.4 years ago by
Koki
▴ 10 • written 7.4 years ago by
hassangiahi
• 0
2
votes
3
replies
1.7k
views
combine different GSE on different GPL
annotation
genesymbols
meta analysis
8.2 years ago
wahaha123
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Limma with covariates
by
Chris
▴ 10
Thank you James for the detailed follow up! I great appreciate it. The first model.matrix is similar to mine with 4 columns. Try your sugge…
Comment: Limma with covariates
by
James W. MacDonald
66k
There's a couple of things to unpack here. By default, if you specify no intercept (`~ 0 + ...`), then R will try to generate a cell means …
Comment: Limma with covariates
by
Chris
▴ 10
Thanks James! May I know why the sex covariate has two columns? Meanwhile, the groups also has 2 levels as sex but only has one column in t…
Answer: Limma with covariates
by
James W. MacDonald
66k
When you add the other coefficients to your model, you cannot have separate disease/control coefficients (unless you reorder and put diseas…
Answer: DESeq2 - vst() - log2FC - no replicates
by
ATpoint
★ 4.2k
You can subtract the vst values to approximate logFCs, see: https://support.bioconductor.org/p/106128/
Votes
Comment: Limma with covariates
A: Increase text size of axis labels in EnhancedVolcano
Answer: Limma with covariates
Answer: Limma with covariates
A: Combining ComplexHeatmap with other plot types
Awards
• All
Popular Question
to
BioNovice247
• 0
Scholar
to
James W. MacDonald
66k
Teacher
to
Michael Love
42k
Teacher
to
Yang Liao
▴ 440
Popular Question
to
jonas.freimuth
▴ 20
Locations
• All
United States,
just now
United Kingdom,
10 minutes ago
United States,
27 minutes ago
United States,
39 minutes ago
France,
41 minutes ago
Traffic: 698 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6