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metaDE R and RRA R
microarray meta analysis
4.8 years ago lily ▴ 20
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Meta_analysis of microarray data
microarray microarray data Meta Analysis platform
updated 5.8 years ago by 67k • written 5.8 years ago by • 0
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Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.9 years ago by 67k • written 5.9 years ago by • 0
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how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA pvalcombination meta analysis metaMA DEGs' indices
6.6 years ago niteshkumar20sept • 0
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meta de r package
meta analysis
7.0 years ago lily ▴ 20
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Meta Analysis on CAMERA results
limma camera cohen d meta analysis
7.8 years ago Andy91 ▴ 60
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meta analysis of clc output(differential expression data )
rnaseq metaseq clc output pvalue meta analysis
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
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combine different GSE on different GPL
annotation genesymbols meta analysis
8.6 years ago wahaha123 • 0
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Answer: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
I haven't used nf-core but, from browsing through their documentation, they didn't seem to have any pipeline for differential transcript ex…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by Gordon Smyth 52k
The poster needs to run Salmon with `--numGibbsSamples=50`. I suspect that nf-core just won't do that, so Salmon needs to be run directly.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.6k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
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