Bioconductor Methods

Showing : methods • reset

votes

replies

2.0k

views

BSgenome methods GenomicRanges

6.4 years ago Aditya ▴ 160

votes

1.3k

views

S4Vectors methods

6.4 years ago Aditya ▴ 160

votes

replies

1.8k

views

s4 methods SummarizedExperiment

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by brendan.innes ▴ 20

votes

replies

1.6k

views

devtools S4 methods cache

7.2 years ago Michael Steinbaugh ▴ 90

votes

replies

1.4k

views

deconvolution methods

8.0 years ago casey.rimland ▴ 170

5 results • Page 1 of 1

Recent ...

Replies

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All