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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
5.5 years ago
Aditya
▴ 160
0
votes
1
reply
1.0k
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Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
5.5 years ago
Aditya
▴ 160
2
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2
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1.4k
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SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
brendan.innes
▴ 20
0
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3
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1.3k
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How to clear a cached S4 method
devtools
S4
methods
cache
6.3 years ago
Michael Steinbaugh
▴ 90
0
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0
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1.1k
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
7.1 years ago
casey.rimland
▴ 170
5 results • Page
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Comment: Problem using locateVariants() from the VariantAnnotation package
by
Marco
• 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient.
by
canarias
• 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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