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microRNA
•
reset
6
votes
11
replies
2.6k
views
edgeR on microRNA data
microRNA
edgeR
miRNA
12.6 years ago • updated 2.9 years ago
Gordon Smyth
50k
6
votes
2
replies
973
views
pair information of microRNA and Targets prediction
microRNA
RmiR
microRNA
RmiR
updated 14.2 years ago by
Laurent Gautier
★ 2.3k • written 14.2 years ago by
jrwang@itri.org.tw
▴ 60
3
votes
4
replies
2.5k
views
How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2
microrna
differential expression
stable expression
8.6 years ago
mariakarand
▴ 20
2
votes
2
replies
1.6k
views
normalized read count per group from edgeR
microrna
edger
8.1 years ago
manoharankumar01
• 0
2
votes
1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.5 years ago by
Michael Love
41k • written 8.5 years ago by
mariakarand
▴ 20
2
votes
6
replies
1.7k
views
edgeR_robust: where are moderately expressed genes?
edger
rnaseq
microrna
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
marek_koter
• 0
1
vote
7
replies
1.6k
views
High padj in DESeq2
deseq2
RNA-seq
microRNA
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
saulwang0102
▴ 10
1
vote
4
replies
808
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
18 months ago
faiza
• 0
1
vote
6
replies
1.0k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
16 months ago
abhay.kanodia
• 0
0
votes
2
replies
1.5k
views
ChIPpeakAnno, getAnnotation question
Annotation
microRNA
ChIPpeakAnno
Annotation
microRNA
ChIPpeakAnno
12.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
BIRD Call for papers and posrters: New submission deadline September 15
Pathways
microRNA
Pathways
microRNA
17.7 years ago
Prof.Roland Wagner
▴ 60
0
votes
0
replies
1.3k
views
BIRD: Fiest internation conference : Bioinformatics in Research and Development
Pathways
microRNA
Pathways
microRNA
17.8 years ago
Prof.Roland Wagner
▴ 60
0
votes
0
replies
933
views
BIRD 07 call for particpation
Pathways
microRNA
Pathways
microRNA
17.4 years ago
Prof.Roland Wagner
▴ 60
0
votes
0
replies
832
views
Normalization of miRNA arrays
Normalization
microRNA
Normalization
microRNA
16.9 years ago
Denise Mauldin
▴ 50
0
votes
0
replies
1.2k
views
qPCR 2011 Symposium Talk and Poster CALL
qPCR
Genetics
microRNA
qPCR
Genetics
microRNA
13.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
775
views
duplicate correlation of 4 "within array replicates" limma gui
GUI
limma
microRNA
GUI
limma
microRNA
15.6 years ago
Christine Voellenkle
▴ 90
0
votes
0
replies
971
views
BIRD
Pathways
microRNA
Pathways
microRNA
17.9 years ago
Prof.Roland Wagner
▴ 60
0
votes
0
replies
1.5k
views
open Junior group leader position, Medical University of Innsbruck, Austria
Proteomics
Cancer
microRNA
tRanslatome
Proteomics
Cancer
microRNA
tRanslatome
16.0 years ago
Johannes Rainer
▴ 300
0
votes
0
replies
1.6k
views
qPCR event preview - April 2010
miRNA
qPCR
Normalization
probe
microRNA
cycle
miRNA
qPCR
Normalization
probe
microRNA
14.0 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.6k
views
BIRD 2008 Conference Call for papers
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
16.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
15.6 years ago
Florian Markowetz
▴ 20
0
votes
0
replies
684
views
duplicate correlation of 4 "within array replicates" limma gui
GUI
limma
microRNA
GUI
limma
microRNA
15.6 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
1.3k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI
limma
limmaGUI
microRNA
GUI
limma
limmaGUI
microRNA
15.6 years ago
Gordon Smyth
50k
0
votes
2
replies
1.6k
views
LogFC in Limma
probe
limma
microRNA
probe
limma
microRNA
updated 15.5 years ago by
Gordon Smyth
50k • written 15.5 years ago by
Hai Lin
▴ 20
0
votes
3
replies
2.0k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 15.5 years ago by
Steve Lianoglou
★ 13k • written 15.5 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
5
replies
1.7k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 15.5 years ago by
Camper Chih-Wei Liu
▴ 40 • written 15.5 years ago by
Michael Lawrence
▴ 620
0
votes
0
replies
940
views
LogFC in Limma
probe
limma
microRNA
probe
limma
microRNA
15.5 years ago
Hai Lin
▴ 20
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
15.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.0k
views
Loading problem with Rlibstree and microRNA packages on Mac OS X 10.4
rtracklayer
microRNA
rtracklayer
microRNA
15.4 years ago
Luo Weijun
★ 1.6k
0
votes
3
replies
1.3k
views
Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Cancer
Breast
rtracklayer
microRNA
Cancer
Breast
rtracklayer
microRNA
updated 15.4 years ago by
Luo Weijun
★ 1.6k • written 15.4 years ago by
Steven McKinney
▴ 310
0
votes
3
replies
1.2k
views
AgiMicroRna problems
miRNA
Normalization
FeatureExtraction
PROcess
microRNA
AgiMicroRna
miRNA
Normalization
updated 13.6 years ago by
Mike Walter
▴ 230 • written 13.6 years ago by
Mark Cowley
▴ 910
0
votes
0
replies
1.2k
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
microRNA
SNP
qPCR
Cancer
15.3 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
966
views
New microRNA & qPCR workshop in April 2009
SNP
qPCR
Normalization
Regression
microRNA
SNP
qPCR
Normalization
Regression
microRNA
15.1 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.4k
views
qPCR NEWS - February 2009
qPCR
Normalization
PROcess
microRNA
qPCR
Normalization
PROcess
microRNA
15.2 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.6k
views
BIRD 2008 Conference
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
16.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.5k
views
BIRD 2008
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
16.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
2.1k
views
Two positions (PhD or PostDoc) in Berlin/Germany in biomedical data management and analysis
microRNA
microRNA
15.0 years ago
Ulf Leser
▴ 10
0
votes
0
replies
837
views
microRNA Agilent normalization
Normalization
microRNA
Normalization
microRNA
15.0 years ago
Pedro Lopez-Romero
▴ 120
0
votes
1
reply
697
views
on-line documentation for package microRNA
microRNA
microRNA
updated 14.7 years ago by
Martin Morgan
25k • written 14.7 years ago by
mauede@alice.it
▴ 870
0
votes
2
replies
848
views
support for miRNA-1_0?
affy
microRNA
affy
microRNA
updated 14.7 years ago by
cstrato
★ 3.9k • written 14.7 years ago by
Dick Beyer
★ 1.4k
0
votes
3
replies
1.5k
views
R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription
miRNA
Cancer
Homo sapiens
biomaRt
microRNA
Transcription
miRNA
Cancer
14.6 years ago
mauede@alice.it
▴ 870
0
votes
3
replies
2.7k
views
Affymetrix genechip miRNA array analysis
miRNA
limma
microRNA
miRNA
limma
microRNA
14.6 years ago
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
2.2k
views
R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA
Homo sapiens
biomaRt
microRNA
miRNA
Homo sapiens
biomaRt
microRNA
14.5 years ago
mauede@alice.it
▴ 870
0
votes
10
replies
2.6k
views
Very low P-values in limma
miRNA
limma
microRNA
miRNA
limma
microRNA
updated 14.5 years ago by
Olga Vitek
▴ 40 • written 14.5 years ago by
Paul Geeleher
★ 1.3k
0
votes
11
replies
3.0k
views
Very low P-values in limma
miRNA
Microarray
Normalization
GO
vsn
limma
microRNA
miRNA
Microarray
Normalization
GO
updated 14.5 years ago by
Paul Geeleher
★ 1.3k • written 14.5 years ago by
Gordon Smyth
50k
0
votes
0
replies
1.8k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
14.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
1
reply
1.1k
views
building an annotation library from scratch
miRNA
Annotation
Organism
db0
AnnotationDbi
microRNA
miRNA
Annotation
Organism
db0
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
James F. Reid
▴ 610
0
votes
2
replies
1.1k
views
cvArray error from AgiMicroRna package
Cancer
microRNA
Cancer
microRNA
14.2 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
724
views
Annotation and expression detection of Illumina microRNA expression prolifing panels
Annotation
probe
annotate
microRNA
Annotation
probe
annotate
microRNA
15.3 years ago
Jitao David Zhang
▴ 340
0
votes
0
replies
1.5k
views
qPCR NEWS - December 2008
qPCR
graph
PROcess
microRNA
qPCR
graph
PROcess
microRNA
15.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
50 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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