Showing : microarray • reset
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[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 14.6 years ago by ▴ 310 • written 14.6 years ago by ★ 8.2k
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Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Network
updated 14.6 years ago by ▴ 310 • written 14.6 years ago by ★ 8.2k
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Bioconductor Digest, Vol 98, Issue 6
Microarray Annotation GO probe GOstats Microarray Annotation GO probe GOstats
updated 14.6 years ago by ★ 7.2k • written 14.7 years ago by ▴ 10
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[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.7 years ago stefano iacus ▴ 430
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Integration
Microarray Microarray
14.7 years ago Prasad Siddavatam ▴ 150
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.7 years ago Paolo Sonego ▴ 140
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Visualising the GO structure (RNA-seq) using topGO and goseq
Microarray GO Visualization Microarray GO Visualization
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 140
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Need Help With Factorial Design Matrix in Limma
Microarray Microarray
14.7 years ago Jonathan Harper ▴ 10
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limma design problem with a two color dataset
Microarray Normalization limma ArrayExpress Microarray Normalization limma ArrayExpress
14.7 years ago Gordon Smyth 53k
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dealing with negative values in illumina
Microarray probe Microarray probe
updated 14.7 years ago by ▴ 80 • written 14.7 years ago by ▴ 150
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 14.7 years ago by ▴ 80 • written 14.7 years ago by ▴ 620
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limma design problem with a two color dataset
Microarray Normalization limma ArrayExpress Microarray Normalization limma ArrayExpress
14.7 years ago Yong Li ▴ 190
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working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ★ 1.5k
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transfering Illumina Beadarray data from Partek into Bioconductor's beadarray in order to run Limma
Microarray Preprocessing limma beadarray Microarray Preprocessing limma beadarray
updated 14.7 years ago by ★ 3.6k • written 14.7 years ago by ★ 1.1k
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transfering Illumina Beadarray data from Partek into Bioconductor's beadarray in order to run Limma
Microarray beadarray Microarray beadarray
14.7 years ago Gustavo Kijak ▴ 10
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Separate channel analysis on connected design
Microarray limma Microarray limma
updated 14.7 years ago by ★ 6.0k • written 14.7 years ago by ▴ 20
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gcrma - u133aaofav2probe error
Microarray gcrma marray Microarray gcrma marray
updated 14.7 years ago by 68k • written 14.7 years ago by ▴ 10
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Please advice
Microarray GO limma Microarray GO limma
updated 14.7 years ago by ▴ 370 • written 14.8 years ago by ★ 6.0k
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Extracting top upregulated genes from Limma analysis
Microarray Microarray
updated 14.8 years ago by ▴ 930 • written 14.8 years ago by ▴ 140
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Affymetrix microarray normalization based on hybridization spikes
Microarray Normalization Microarray Normalization
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 100
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Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 14.8 years ago by 21k • written 14.8 years ago by 16k
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Detection calls and LIMMA
Microarray Microarray
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 240
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HELP: MICROARRAYS
Microarray Microarray
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 10
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Explained variance for ICA
Microarray Microarray
updated 14.8 years ago by ▴ 140 • written 14.8 years ago by ▴ 70
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miRNA-1_0_2Xgain win binary packages
miRNA Microarray cdf miRNA Microarray cdf
updated 14.8 years ago by 6.7k • written 14.8 years ago by ▴ 20
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ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA Microarray Normalization AgiMicroRna miRNA Microarray Normalization AgiMicroRna
14.8 years ago Paola Ostano ▴ 10
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Question regarding background correction in lumi package
Microarray lumi Microarray lumi
14.8 years ago Pan Du ★ 1.2k
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'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
14.8 years ago Santosh Patnaik ▴ 30
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[COURSE ANNOUNCE] CSAMA 2011 Computational Statistics for Genome Biology
Microarray Annotation Cancer Microarray Annotation Cancer
14.8 years ago stefano iacus ▴ 430
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How can I obtain the expression set from an antibody microarray
Microarray Preprocessing Microarray Preprocessing
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 60
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How GAGE handles missing values?
Microarray gage Microarray gage
14.8 years ago Luo Weijun ★ 1.6k
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Analysing multiple-platform gene expression data
Microarray Microarray
updated 14.8 years ago by ▴ 140 • written 14.9 years ago by ▴ 80
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GAGE: question about interpretation of "ambiguous" results from geneset analysis
Microarray Pathways Escherichia coli gage Microarray Pathways Escherichia coli gage
14.8 years ago Luo Weijun ★ 1.6k
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mirna102Xgaincdf package
miRNA Microarray cdf miRNA Microarray cdf
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 50
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Application of Method of Aryee et al to Illumina methylation Arrays
Microarray Microarray
14.9 years ago Martin Aryee ▴ 20
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Application of Method of Aryee et al to Illumina methylation Arrays
Microarray Cancer Microarray Cancer
14.9 years ago Richard Friedman ★ 2.0k
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cdf.file for Affymetrix Rat Gene 1.1 ST Array Plate
Microarray Normalization cdf probe Microarray Normalization cdf probe
updated 14.9 years ago by ★ 4.1k • written 14.9 years ago by ▴ 10
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Concept of cyclic loess
Microarray Microarray
14.9 years ago viritha kaza ▴ 580
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Single channel array, limma and imagene
Microarray Annotation limma Microarray Annotation limma
14.9 years ago Carla Zammit ▴ 40
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Making median same for each sample
Microarray Microarray
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 580
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Problems of CDF environment while doing RMA
Microarray cdf Microarray cdf
updated 14.9 years ago by ★ 13k • written 14.9 years ago by ▴ 10
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lumi for Illumina methylation data - understanding the colour adjustment
Microarray Normalization probe Microarray Normalization probe
updated 15.0 years ago by ▴ 480 • written 15.0 years ago by ★ 1.2k
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Conversion of affymetrix cell file to raw text file
Microarray probe ASSIGN Microarray probe ASSIGN
15.0 years ago viritha kaza ▴ 580
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
15.0 years ago Pan Du ★ 1.2k
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Agilent Feature Extraction Software vs GenePix Pro
Microarray limma Microarray limma
15.0 years ago Juan C Oliveros Collazos ▴ 190
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1.0k
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Problems with the package GEOsubission
Microarray Microarray
updated 15.0 years ago by ▴ 30 • written 15.0 years ago by ▴ 20
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3
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1.2k
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Complete newbie - reconstruct array image with only data file?
Microarray Microarray
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by ▴ 40
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4
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1.3k
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Single channel array, limma and imagene
Microarray limma Microarray limma
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 40
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2.1k
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miRNA Array from Affymetrix
miRNA Microarray cdf miRNA Microarray cdf
updated 15.0 years ago by ★ 4.1k • written 15.0 years ago by ▴ 40
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gProcessed Signal normalization using cyclic loess
Microarray Normalization Microarray Normalization
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 580
2,319 results • Page 23 of 47
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
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Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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