Showing : microarray • reset
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Help with Background correction (Normexp+offset)
Microarray Microarray
updated 14.4 years ago by ▴ 1000 • written 14.4 years ago by ▴ 60
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7
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affxparser updateCelUnit question
Microarray hgu133a2 affxparser Microarray hgu133a2 affxparser
14.4 years ago Martha Behnke ▴ 100
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Background correction (Normexp+offset)
Microarray Microarray
updated 14.4 years ago by ▴ 190 • written 14.4 years ago by ▴ 60
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2.1k
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Log2 fold change single replicate RNA seq
RNASeq Microarray limma RNASeq Microarray limma
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 560
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1
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Bioconductor Mail list
Microarray Microarray
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 10
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Fwd: Unable to install packages
Microarray Annotation cdf probe cycle Microarray Annotation cdf probe cycle
14.4 years ago James W. MacDonald 68k
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1.3k
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creating an MA plot with two single channel agilent arrays
Microarray Microarray
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 20
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1
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3.4k
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2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 14.4 years ago by ▴ 210 • written 14.4 years ago by ▴ 110
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Microarrays intersection to expand your discovery
Microarray Cancer Microarray Cancer
14.4 years ago Tata Mumu ▴ 10
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1.1k
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how to make an MA plot with single color agilent microarray?
Microarray limma arrayQualityMetrics Microarray limma arrayQualityMetrics
14.4 years ago Wolfgang Huber ★ 13k
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952
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sequential removeBatchEffect()?
Microarray GO limma Microarray GO limma
14.4 years ago Gordon Smyth 53k
0
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1
reply
743
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Retrieving a subset from normalized microarray data for
Microarray Normalization Microarray Normalization
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 10
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limma design and contrast matrices for two-color (two-channel) data with common biological reference, not common mRNA reference
Microarray Organism limma oligo Microarray Organism limma oligo
14.4 years ago Chris Lasher ▴ 10
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how to make an MA plot with single color agilent microarray?
Microarray Microarray
14.4 years ago Richard Green ▴ 90
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1
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1.3k
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CMA help
Microarray CMA Microarray CMA
updated 14.5 years ago by ★ 4.2k • written 14.5 years ago by ▴ 30
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4
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1.6k
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Limma and spot-specific dye effects for an environmental microarray
Microarray limma Microarray limma
updated 5.0 years ago by 53k • written 14.5 years ago by ▴ 50
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815
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Follow-up: AnnotationDbi and makeProbePackage for PM-only Affy chips
Microarray affy AnnotationDbi Microarray affy AnnotationDbi
14.5 years ago Ariel Grostern ▴ 80
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1
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1.6k
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How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Normalization genefilter limma Microarray Normalization genefilter limma
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 10
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3
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analysis of reference design with even dye-swap across biological replicates
Microarray limma Microarray limma
updated 14.5 years ago by ★ 2.0k • written 14.5 years ago by ▴ 60
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6
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2.1k
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LIMMAing normalized and background corrected MA-data derived by a text file
Microarray Normalization probe Microarray Normalization probe
updated 14.5 years ago by ▴ 190 • written 14.5 years ago by ▴ 50
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5
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1.8k
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cluster genes based on expression pattern
Microarray Microarray
updated 14.5 years ago by ▴ 260 • written 14.5 years ago by ▴ 290
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1
reply
971
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rma vs. call.exprs
Microarray Microarray
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ★ 1.5k
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5
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2.3k
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Limma : post statistical gene filtering
Microarray Normalization Microarray Normalization
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 30
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855
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Biostats/Bioinformatics job University of Washington
Microarray Microarray
14.5 years ago Dick Beyer ★ 1.4k
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2
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1.4k
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illumina beadarray GEO files
Microarray beadarray Microarray beadarray
updated 14.5 years ago by ▴ 610 • written 14.5 years ago by ▴ 280
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3.1k
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cause 'memory not mapped'
Microarray Genetics Normalization affy Microarray Genetics Normalization affy
updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by ▴ 10
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15
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3.5k
views
PreFiltering probe in microarray analysis
Microarray limma oligo Microarray limma oligo
updated 14.5 years ago by ▴ 220 • written 14.5 years ago by ▴ 30
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1.6k
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bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 10
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CALCULATION OF P VALUE
Microarray Microarray
14.5 years ago sanchita 0804 ▴ 50
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1.2k
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question about mt.maxT output (multtest)
Sequencing Microarray Category Sequencing Microarray Category
14.5 years ago Les Dethlefsen ▴ 20
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1
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1.6k
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Packages "clusterProfiler" and "illuminaHumanv4.db" not available for installation
Microarray GO Microarray GO
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 10
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1.3k
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question/issue with multtest mt.maxT
Sequencing Microarray GUI Category Sequencing Microarray GUI Category
14.5 years ago Les Dethlefsen ▴ 20
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0
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1.3k
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Chip version of Illumina HT 12 data [ lumi getChipInfo() method ]
Microarray Normalization Cancer Breast lumi Microarray Normalization Cancer Breast lumi
14.5 years ago Md.Mamunur Rashid ▴ 260
4
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0
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3.4k
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
updated 7 months ago by • 0 • written 14.5 years ago by ★ 2.0k
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lumi : Problems with the gammaFitEM() and lumiMethyStatus() functions.in lumi
Microarray Cancer lumi Microarray Cancer lumi
14.5 years ago NAIARA GARCÍA ▴ 10
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1.7k
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about limma linear models
Microarray limma DOSE Microarray limma DOSE
updated 14.6 years ago by ▴ 40 • written 14.6 years ago by 53k
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1.3k
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about limma linear models
Microarray limma Microarray limma
updated 14.6 years ago by ★ 6.0k • written 14.6 years ago by ▴ 40
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bitmap() extremely slow!
Microarray affyPLM Microarray affyPLM
14.6 years ago Groot, Philip de ▴ 630
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3.5k
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Delta CT data distribution and cluster analyses; machine learning or other
Microarray Microarray
updated 14.6 years ago by ★ 2.0k • written 14.6 years ago by ▴ 560
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0
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927
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gammaFitEM()
Microarray lumi Microarray lumi
14.6 years ago Richard C. McEachin ▴ 10
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1.1k
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Job opening in Boston, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
14.6 years ago Wittner, Ben ▴ 290
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4
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3.3k
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ChIP-Seq Normalization - Quantile (Rank) normalization
Microarray Normalization Microarray Normalization
updated 14.6 years ago by ▴ 100 • written 14.6 years ago by ▴ 30
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775
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Error in FUN(c("AFFX-b-ActinMur/M12481_3_at", "AFFX-b-ActinMur/M12481_5_at", : , subscript out of bounds
Microarray cdf Microarray cdf
14.6 years ago pratibha.mani@geschickten.com ▴ 10
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1.2k
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BrainArray custom CDF repository missing in biocReposList()
Microarray cdf probe graph Microarray cdf probe graph
updated 14.6 years ago by 68k • written 14.6 years ago by ▴ 100
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1
reply
2.3k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 100
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0
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985
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R/Bioc workshops at UC Riverside
Microarray Microarray
14.6 years ago Thomas Girke ★ 1.7k
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4
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1.3k
views
I'm confused about LIMMA statistics
Microarray limma Microarray limma
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 40
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1
reply
2.0k
views
LIMMA: donor effect
Microarray limma DOSE Microarray limma DOSE
updated 14.6 years ago by ▴ 380 • written 14.6 years ago by 53k
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1.2k
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custom CDF files for non-redundant transcript/gene annotation that is consistent over several platforms
Microarray Annotation cdf probe Microarray Annotation cdf probe
14.6 years ago Andreas Heider ▴ 340
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6
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1.7k
views
BrainArray custom CDF repository missing in biocReposList()
Microarray Microarray
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 760
2,319 results • Page 22 of 47
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
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Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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