Showing : microarray • reset
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Limma: design for a multiple level factor taking into account centre and plate
Microarray Cancer Microarray Cancer
15.0 years ago Daniel Brewer ★ 1.9k
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Biological and Technical replicates
Microarray Microarray
15.0 years ago Marcos Pinho ▴ 200
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R: Illumina human ht12 v3 beadchip and illuminaHumanv3BeadID.db
Microarray Annotation GO Microarray Annotation GO
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 340
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Help for model.matrix() in microarray analysis
Microarray limma PROcess Microarray limma PROcess
updated 15.0 years ago by ★ 6.8k • written 15.1 years ago by ▴ 60
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HTqPCR question
Microarray limma GLAD HTqPCR Microarray limma GLAD HTqPCR
15.1 years ago Heidi Dvinge ★ 2.0k
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Limma: How to analyze 1- and 2- colour Agilent
Microarray Normalization limma convert Microarray Normalization limma convert
15.1 years ago Gordon Smyth 53k
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limma and minimum fold change
Microarray vsn limma Microarray vsn limma
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 70
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Background correction with just a few spots
Microarray limma Microarray limma
updated 15.1 years ago by 53k • written 15.1 years ago by ▴ 370
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898
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Problems with the package GEOsubission
Microarray Microarray
15.1 years ago Fabian Grammes ▴ 30
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1.1k
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Limma: How to analyze 1- and 2- colour Agilent
Microarray limma Microarray limma
15.1 years ago Edwin Groot ▴ 230
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1.5k
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Can any one please help me regadrding Illumina humanv3.microarray
Microarray GO Leukemia Microarray GO Leukemia
updated 15.1 years ago by ★ 13k • written 15.1 years ago by ▴ 100
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Illumina human HT12 v3. microarray
Microarray GO Leukemia Microarray GO Leukemia
15.1 years ago Pradeep Battula ▴ 100
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2.1k
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Fwd: how to plot corr between two tissues/dendrograms
Microarray GO Clustering Microarray GO Clustering
updated 15.1 years ago by ★ 1.1k • written 15.1 years ago by 21k
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library (sma)
Microarray Clustering Microarray Clustering
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 10
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1.8k
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Best way to get updated annotation for BACs
Microarray Annotation Cancer BAC Microarray Annotation Cancer BAC
updated 15.1 years ago by 21k • written 15.1 years ago by ★ 1.9k
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1.3k
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how to plot corr between two tissues/dendrograms
Microarray GO Clustering Microarray GO Clustering
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 10
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3
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1.5k
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filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 15.1 years ago by ▴ 80 • written 15.1 years ago by ▴ 240
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filter on Human Gene U133 Plus 2
Microarray xps Microarray xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
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Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Microarray BRAIN Microarray BRAIN
updated 15.1 years ago by ▴ 10 • written 15.1 years ago by ▴ 40
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994
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Dye swaps and M values
Microarray Microarray
15.1 years ago Mcmahon, Kevin ▴ 70
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1.6k
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Problem importing ArrayExpress data for custom array into BioConductor
Microarray cdf ArrayExpress Microarray cdf ArrayExpress
updated 15.1 years ago by ★ 13k • written 15.1 years ago by ▴ 10
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1.6k
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Cyclic Loess
Microarray Microarray
15.1 years ago viritha kaza ▴ 580
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5
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2.6k
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Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 15.1 years ago by ▴ 120 • written 15.1 years ago by ▴ 70
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2
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1.8k
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New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
15.1 years ago Luo Weijun ★ 1.6k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.1 years ago Martin Morgan 25k
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910
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Limma :: decideTest question
Microarray limma Microarray limma
15.1 years ago Gordon Smyth 53k
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1.5k
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clustering of microarray time-series data
Microarray Clustering limma maSigPro Microarray Clustering limma maSigPro
updated 15.1 years ago by ▴ 240 • written 15.1 years ago by ▴ 740
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How many folds?
Microarray Microarray
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 110
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Limma :: decideTest question
Microarray Microarray
15.1 years ago Lorenzo Bomba ▴ 20
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1.8k
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error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ▴ 60
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Help on extracting up-regulated genes with limma‏
Microarray limma Microarray limma
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 10
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BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.2 years ago Daniela Beißer ▴ 20
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question regarding differential expression
Microarray Microarray
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 450
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6
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1.8k
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Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Microarray Microarray
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 350
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4
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about illumina data
Microarray PROcess Microarray PROcess
updated 15.2 years ago by 6.7k • written 15.3 years ago by ▴ 90
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BioNet - interpretation of node score
Microarray Visualization Network BioNet Microarray Visualization Network BioNet
15.2 years ago Eva Benito Garagorri ▴ 70
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how to do time course data analysis of smd format?
Microarray limma Microarray limma
updated 15.2 years ago by ▴ 10 • written 15.2 years ago by ▴ 90
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agilent shRNA library
Microarray GeneSpring Microarray GeneSpring
15.2 years ago Giusy Della Gatta ▴ 50
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1.7k
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Calculation of t-tests for factorial design
Microarray limma Microarray limma
written 15.2 years ago by ▴ 80
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1.0k
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COURSE: R and Bioconductor courses at Imperial College London
Microarray Microarray
15.2 years ago North, Bernard V ▴ 120
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1.6k
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gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 15.3 years ago by ▴ 260 • written 15.3 years ago by ▴ 330
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Any package like genefilter for NGS?
Microarray genefilter Microarray genefilter
15.3 years ago Xiaohui Wu ▴ 280
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1.8k
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
15.3 years ago rcaloger ▴ 500
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1
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895
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Any package like genefilter for NGS?
Microarray genefilter Microarray genefilter
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 280
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1.5k
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
15.3 years ago ifig319@ifi.csic.es ▴ 10
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2.8k
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downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by 21k
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5
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2.8k
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Bioconductor-EBImage problem
Microarray EBImage Microarray EBImage
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 20
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1.2k
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Long Time Series analysis
Microarray Yeast Microarray Yeast
updated 15.3 years ago by ▴ 230 • written 15.3 years ago by ▴ 740
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1
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992
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average difference and global scaling for normalizing affymetrix expression data?
Microarray limma Microarray limma
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 410
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1
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1.9k
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topGO documentation / clarification
Microarray GO topGO Microarray GO topGO
updated 15.3 years ago by ▴ 400 • written 15.3 years ago by ▴ 60
2,319 results • Page 24 of 47
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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