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microarray
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0
votes
0
replies
927
views
Long Time Series analysis
Microarray
Yeast
Microarray
Yeast
15.3 years ago
Xiaokuan Wei
▴ 230
0
votes
2
replies
2.2k
views
Bacterial genomics
Sequencing
Microarray
qPCR
genomes
Sequencing
Microarray
qPCR
genomes
updated 15.3 years ago by
Hervé Pagès
16k • written 15.3 years ago by
Mathieu Parent
▴ 30
0
votes
6
replies
2.3k
views
heatplot() 1. red-*black*-green palette, 2.suppress drawing of the row dendrogram (but NOT row reordering)
Microarray
Microarray
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
k. brand
▴ 420
0
votes
0
replies
758
views
Analysis: two-color, time series
Microarray
limma
Microarray
limma
15.3 years ago
Gordon Smyth
53k
0
votes
0
replies
804
views
Analysis: two-color, time series
Microarray
limma
Microarray
limma
15.3 years ago
Ольга Камнева
▴ 90
0
votes
1
reply
1.1k
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
updated 15.3 years ago by
Chintanu
▴ 310 • written 15.3 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
15.4 years ago
Chintanu
▴ 310
0
votes
3
replies
1.3k
views
Nested Design (Again) & Subset WithinArray Correlation
Microarray
Microarray
updated 15.4 years ago by
Gordon Smyth
53k • written 15.4 years ago by
Y. Osee Sanogo
▴ 80
0
votes
1
reply
931
views
Nested Design (Again) & Subset WithinArray Correlation
Microarray
limma
Microarray
limma
updated 15.4 years ago by
Y. Osee Sanogo
▴ 30 • written 15.4 years ago by
Gordon Smyth
53k
0
votes
13
replies
2.6k
views
Analysing DNA methylation microarrays in Bioconductor
Microarray
Microarray
updated 15.4 years ago by
Claus-Jürgen Scholz
▴ 90 • written 15.4 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.1k
views
Error importing XYS
Microarray
Microarray
updated 15.4 years ago by
Benilton Carvalho
★ 4.3k • written 15.4 years ago by
Marcelo Brandão
▴ 110
0
votes
2
replies
1.6k
views
error/problem with biomaRt gene symbol query
Microarray
Cancer
probe
biomaRt
ASSIGN
Microarray
Cancer
probe
biomaRt
ASSIGN
updated 15.4 years ago by
Steffen
▴ 500 • written 15.4 years ago by
Sergii Ivakhno
▴ 100
0
votes
1
reply
1.3k
views
Problems with arrayQualityMetrics
Microarray
Genetics
GO
arrayQualityMetrics
Microarray
Genetics
GO
arrayQualityMetrics
updated 15.4 years ago by
Audrey Kauffmann
▴ 110 • written 15.4 years ago by
Ingunn Berget
▴ 150
0
votes
2
replies
1.4k
views
GO term enrichment
Microarray
GO
probe
biomaRt
Microarray
GO
probe
biomaRt
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.4 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
10
replies
2.6k
views
AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.
miRNA
Microarray
Cancer
microRNA
miRNA
Microarray
Cancer
microRNA
15.5 years ago
Neel Aluru
▴ 460
0
votes
2
replies
807
views
Questions about calculate gene signal
Microarray
probe
Microarray
probe
updated 15.5 years ago by
Richard Friedman
★ 2.0k • written 15.5 years ago by
Yang Lv
▴ 10
0
votes
0
replies
931
views
AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.
miRNA
Microarray
Cancer
microRNA
miRNA
Microarray
Cancer
microRNA
15.5 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
1.2k
views
Using multiclass in SAMr
Microarray
Microarray
15.5 years ago
Casper Shyr
▴ 140
0
votes
4
replies
2.3k
views
gc-rma and vsn normalization for rat microarray data
Microarray
Annotation
Normalization
vsn
bgx
puma
Microarray
Annotation
Normalization
vsn
updated 15.5 years ago by
Benilton Carvalho
★ 4.3k • written 15.5 years ago by
Rainer Tischler
▴ 60
0
votes
3
replies
1.4k
views
unique values for repeated geneIDs
Microarray
Microarray
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Hernando Martínez
▴ 100
0
votes
0
replies
1.0k
views
bgx on data without replication
Microarray
affy
bgx
Microarray
affy
bgx
15.5 years ago
Ernest Turro
▴ 30
0
votes
1
reply
1.4k
views
Basic Question about gcrma & exporting to excel (command not working)
Microarray
affy
Microarray
affy
updated 15.5 years ago by
Benilton Carvalho
★ 4.3k • written 15.5 years ago by
Jennifer Ehren
▴ 10
0
votes
0
replies
1.5k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
15.5 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.7k
views
Two Bioconductor Job Opportunities in Seattle
Microarray
Annotation
Cancer
cdf
Microarray
Annotation
Cancer
cdf
15.5 years ago
Martin Morgan
25k
0
votes
3
replies
1.6k
views
Curious error with 'subseq' function from BSgenome (IRanges)
Microarray
Annotation
BSgenome
BSgenome
Microarray
Annotation
BSgenome
BSgenome
updated 15.5 years ago by
Martin Morgan
25k • written 15.5 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
0
replies
19k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
15.5 years ago
David Lyon
▴ 340
0
votes
1
reply
7.3k
views
plotting 3d image of pca analysis
Microarray
Microarray
updated 15.5 years ago by
Kevin Coombes
▴ 430 • written 15.5 years ago by
Frederico Arnoldi
▴ 40
0
votes
1
reply
997
views
What to do with this data? Question on deconfouding and GO analysis
Microarray
Pathways
GO
Microarray
Pathways
GO
updated 15.5 years ago by
Wolfgang Huber
★ 13k • written 15.5 years ago by
January Weiner
▴ 370
0
votes
0
replies
713
views
Collaborators
Microarray
Clustering
Cancer
Ovarian
Microarray
Clustering
Cancer
Ovarian
15.5 years ago
Alexandru Floares
▴ 10
0
votes
0
replies
1.3k
views
SPIA package problem
Microarray
GO
Cancer
Organism
hgu95av2
mgug4122a
SPIA
Microarray
GO
Cancer
Organism
15.5 years ago
January Weiner
▴ 370
0
votes
1
reply
977
views
Fwd: microarray data without replication
Microarray
Microarray
updated 15.5 years ago by
Richard Pearson
▴ 160 • written 15.5 years ago by
Ina Hoeschele
▴ 620
0
votes
2
replies
1.4k
views
annotating lumi
Microarray
Annotation
Normalization
probe
annotate
lumi
Microarray
Annotation
probe
lumi
updated 15.5 years ago by
ywchen@jimmy.harvard.edu
▴ 80 • written 15.5 years ago by
Taylor, Katie
▴ 90
0
votes
2
replies
1.8k
views
help with lumi
Microarray
Annotation
Normalization
probe
lumi
Microarray
Annotation
Normalization
probe
updated 15.5 years ago by
Pan Du
★ 1.2k • written 15.5 years ago by
Taylor, Katie
▴ 90
0
votes
0
replies
1.2k
views
computer out of memory when using sigpathway
Microarray
Annotation
sigPathway
Microarray
Annotation
sigPathway
15.5 years ago
山中程
▴ 10
0
votes
2
replies
1.5k
views
help with illumina microarray (DASL)
Microarray
Annotation
annaffy
lumi
Microarray
Annotation
annaffy
lumi
updated 15.6 years ago by
Pan Du
★ 1.2k • written 15.6 years ago by
Taylor, Katie
▴ 90
0
votes
1
reply
1.9k
views
LIMMA: Suitable measure of error from result object. stdev.unscaled?
Microarray
Cancer
limma
Microarray
Cancer
limma
updated 15.6 years ago by
Gordon Smyth
53k • written 15.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.1k
views
GDS normalization
Microarray
Normalization
Microarray
Normalization
15.6 years ago
Sean Davis
21k
0
votes
1
reply
807
views
Query regarding for Entrez IDpackage
Microarray
Microarray
updated 15.6 years ago by
Marc Carlson
★ 7.2k • written 15.6 years ago by
varpal singh
▴ 120
0
votes
1
reply
1.5k
views
annaffy-like HTML autput for org.Hs.eg.db and similar metadata packages
Microarray
Annotation
GO
annaffy
Microarray
Annotation
GO
annaffy
updated 15.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.6 years ago by
Claudio Lottaz
▴ 40
0
votes
1
reply
963
views
Illumina annotation
Microarray
Annotation
annotate
Microarray
Annotation
annotate
updated 15.6 years ago by
Marc Carlson
★ 7.2k • written 15.6 years ago by
Katie
▴ 20
0
votes
3
replies
1.5k
views
Annotation of orthologs
Microarray
Microarray
updated 15.6 years ago by
Alexandre Kuhn
▴ 60 • written 15.6 years ago by
Nick Schurch
▴ 60
0
votes
2
replies
966
views
(no subject)
Microarray
Clustering
Microarray
Clustering
updated 15.6 years ago by
Andreia Fonseca
▴ 810 • written 15.6 years ago by
varpal singh
▴ 120
0
votes
2
replies
1.4k
views
vennDiagram Statistics Advice
Microarray
limma
Microarray
limma
updated 15.6 years ago by
Wolfgang Huber
★ 13k • written 15.6 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
1.2k
views
AgiMicroRna readMicroRnaAFE error
miRNA
Microarray
miRNA
Microarray
15.6 years ago
Christian Ruckert
▴ 170
0
votes
0
replies
1.3k
views
GeneMeta for 2 color microarray
Microarray
limma
GeneMeta
Microarray
limma
GeneMeta
15.6 years ago
Paul Leo
▴ 970
0
votes
0
replies
933
views
COURSES : Intro to R / Microarray Analysis Using R at Imperial College, LONDON
Microarray
Microarray
15.6 years ago
North, Bernard V
▴ 120
0
votes
5
replies
1.5k
views
comparison of two sets of developmental study
Microarray
Microarray
updated 15.6 years ago by
Steve Lianoglou
★ 13k • written 15.6 years ago by
yan zhou
▴ 80
0
votes
1
reply
1.1k
views
Error in setQCEnvironment(cdfn)-reg
Microarray
cdf
Microarray
cdf
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
NUTAN CHAUHAN
▴ 20
0
votes
3
replies
1.4k
views
Memory and vector size management on linux 64bit
Microarray
lumi
Microarray
lumi
updated 15.6 years ago by
Benilton Carvalho
★ 4.3k • written 15.6 years ago by
Manca Marco PATH
▴ 200
0
votes
0
replies
766
views
Illumina Infinium Background
Microarray
Microarray
15.6 years ago
Gildas Mazo
▴ 10
2,319 results • Page
25 of 47
Recent ...
Replies
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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16k
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68k
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