Showing : mirna-seq • reset
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how to control age and gender effect in expression data using DESeq2
deseq2 rnaseq mirna-seq differential gene expression
written 6.2 years ago by • 0
2
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3
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1.0k
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Limma: Differential expression for micro RNA sequence data
mirna-seq limma
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
0
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2
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925
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help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by ★ 1.1k • written 5.9 years ago by • 0
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2
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help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago ndiayediop2 • 0
6
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7
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Differences between RTCGA and TCGAbiolinks data
r survival analysis rtcga tcgabiolinks mirna-seq
5.9 years ago atakanekiz ▴ 30
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How to find non-DE miRNAs using Deseq2 ?
deseq2 differentially expression mirna-seq mirna target prediction
updated 5.9 years ago by 42k • written 5.9 years ago by • 0
0
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3
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DESeq2: would 'contrast' work for serial experiments?
DESeq2 mirna-seq small RNA-seq
updated 6.3 years ago by 42k • written 6.3 years ago by ▴ 40
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2
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4.4k
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Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.0 years ago by ▴ 680 • written 7.0 years ago by ▴ 10
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4
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4.5k
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miRNA-seq data analysis
miRNA mirna-seq
updated 7.1 years ago by ▴ 250 • written 7.2 years ago by • 0
9 results • Page 1 of 1
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Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and gives inflated significance, as we showed in our 2012 pap…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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