Bioconductor Model

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717

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DESeq2 LRT Model

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by JaneDoe • 0

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replies

942

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model BatchEffect hidden Design DESeq2

2.5 years ago m.glymenaki • 0

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1.1k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by Isabelle • 0

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replies

929

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diffbind blocking model

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by melnuesch ▴ 10

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1.0k

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deseq2 interaction model

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by aec ▴ 90

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2.0k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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2.2k

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edgeR edger "glmqlftest()" timecourse model

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by heikki.sarin ▴ 10

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.8 years ago heikki.sarin ▴ 10

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1.2k

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dexseq timecourse model.matrix model

6.8 years ago heikki.sarin ▴ 10

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1.4k

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dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by heikki.sarin ▴ 10

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1.5k

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EdgeR rank model

6.8 years ago philip.freda • 0

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by athief ▴ 20

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904

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Deseq2 model

7.8 years ago jrivera • 0

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3.0k

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deseq2 model

updated 8.8 years ago by Simon Anders ★ 3.7k • written 8.8 years ago by da.de ▴ 30

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2.2k

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limma goodness fit linear model

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by nonCodingGene ▴ 10

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replies

8.9k

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DESeq2 linear model model

updated 3.0 years ago by Michael Love 41k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

16 results • Page 1 of 1

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Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k

https://support.bioconductor.org/p/73432/#73448

Comment: Couldn't connect to server while using "pathways" by Michael Love 41k

You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

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Popular Question to Vincent J. Carey, Jr. 6.7k

Scholar to ATpoint ★ 4.1k