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motifstack
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4
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1.3k
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motifStack Plotting the correct data positions on x axis
motifStack
R
3.8 years ago
Marwah
• 0
0
votes
7
replies
1.8k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
6.3 years ago
saadmurtazakhan
▴ 10
1
vote
1
reply
1.1k
views
how can I convert a sequence to number
motifStack
updated 6.7 years ago by
Ou, Jianhong
★ 1.3k • written 6.7 years ago by
Bioinformatics
▴ 30
0
votes
0
replies
1.0k
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
7.8 years ago
aramp10
• 0
1
vote
2
replies
1.6k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 7.8 years ago by
Ou, Jianhong
★ 1.3k • written 7.8 years ago by
lmolla
▴ 10
2
votes
2
replies
1.2k
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 7.9 years ago by
Ou, Jianhong
★ 1.3k • written 7.9 years ago by
viyjy
• 0
0
votes
0
replies
1.3k
views
motifstack-GhostScript not working
motifstack
GhostScript
r
8.9 years ago
utra96
• 0
0
votes
10
replies
2.8k
views
motifStack crashes for example from documentation
motifstack
updated 9.8 years ago by
Ou, Jianhong
★ 1.3k • written 9.9 years ago by
map2085
▴ 40
0
votes
1
reply
1.7k
views
MotifStack not plotting?
motifStack
motifStack
12.0 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.3k
views
FW: About your motifStack package
motifStack
motifStack
12.1 years ago
Ou, Jianhong
★ 1.3k
0
votes
0
replies
1.1k
views
About your motifStack package
motifStack
motifStack
12.1 years ago
Ou, Jianhong
★ 1.3k
11 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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