Showing : mouse4302 • reset
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Guidance to handle .CEL file in R
R .cel fiels microarray mouse4302
5.8 years ago aacharya • 0
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860
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mouse4302.db mapping discrepancies between as.list() and select()
r mouse4302 gene ontology
8.2 years ago mark614 • 0
3
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2
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1.5k
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Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 8.5 years ago by 65k • written 8.5 years ago by • 0
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Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
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1.8k
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Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
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1.5k
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Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 10.4 years ago by ▴ 1000 • written 10.4 years ago by ▴ 80
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Limma makeContrasts - incorporating known confounder
mouse4302 limma mouse4302 limma
updated 10.4 years ago by ▴ 610 • written 10.4 years ago by ▴ 10
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3
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1.8k
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error and warning message with blocked samples with Limma
GO Cancer mouse4302 limma GO Cancer mouse4302 limma
updated 11.1 years ago by 50k • written 11.1 years ago by ★ 2.0k
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BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 11.3 years ago by ▴ 540 • written 11.3 years ago by ▴ 110
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Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 11.3 years ago by 65k • written 11.3 years ago by ▴ 180
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1.9k
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BiomaRt: getLDS keeps returning NULL
mouse4302 biomaRt mouse4302 biomaRt
updated 11.4 years ago by ▴ 10 • written 11.4 years ago by ★ 13k
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3
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mouse4302.db and can't find gene symbol annotation
Annotation mouse4302 probe Annotation mouse4302 probe
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 350
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1.5k
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AffyID mapping question
Transcription mouse4302 Transcription mouse4302
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ★ 13k
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3.5k
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KEGG pathway heat map
mouse4302 limma mouse4302 limma
updated 12.0 years ago by ▴ 10 • written 12.0 years ago by ▴ 30
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1
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793
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Biocore Data Team : package mouse4302.db bug
mouse4302 mouse4302
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 30
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880
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affymetrix annotation
Annotation mouse4302 affy Annotation mouse4302 affy
13.3 years ago arne.mueller@novartis.com ▴ 200
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affymetrix annotation
mouse4302 affy mouse4302 affy
updated 13.4 years ago by ▴ 250 • written 13.4 years ago by ▴ 200
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808
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question about CDF file
mouse4302 cdf mouse4302 cdf
updated 13.9 years ago by 21k • written 14.0 years ago by ▴ 10
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909
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Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 14.0 years ago by 65k • written 14.0 years ago by ★ 2.0k
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filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 14.1 years ago by ▴ 610 • written 14.1 years ago by ▴ 190
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only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO mouse4302 cdf affy GO mouse4302 cdf affy
14.6 years ago Jarek Bryk ▴ 110
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Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 100
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3
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974
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KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 170
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error in ls() unused arguments
mouse4302 affyPLM mouse4302 affyPLM
updated 15.3 years ago by ★ 2.3k • written 15.3 years ago by ▴ 40
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[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302 cdf mouse4302 cdf
15.3 years ago Naira Naouar ▴ 40
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Duplicate probesets in mouse4302
mouse4302 mouse4302
updated 15.3 years ago by ★ 2.4k • written 15.3 years ago by ★ 1.3k
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Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.3 years ago by 65k • written 15.3 years ago by ▴ 40
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803
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gseattperm return all NA
mouse4302 Category mouse4302 Category
15.6 years ago Saroj Mohapatra ▴ 450
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
15.8 years ago Matyas Flemr ▴ 10
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1.1k
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namespace error with goProfiles package
GO mouse4302 goProfiles GO mouse4302 goProfiles
updated 15.9 years ago by ▴ 20 • written 15.9 years ago by ▴ 300
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4
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1.1k
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mouse4302.db vs mouse 4302
Annotation Cancer mouse4302 Annotation Cancer mouse4302
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ★ 2.0k
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3
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981
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mouse4302,db_2.0.2 in AffylmGUI
Annotation Cancer mouse4302 affy limma Annotation Cancer mouse4302 affy limma
updated 16.1 years ago by ▴ 450 • written 16.1 years ago by ★ 2.0k
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1.3k
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Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 16.1 years ago by 65k • written 16.1 years ago by ★ 2.0k
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966
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annotation on mouse4302
Annotation mouse4302 Annotation mouse4302
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ▴ 510
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947
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mouse4302
Annotation mouse4302 probe affy Annotation mouse4302 probe affy
17.9 years ago Nianhua Li ▴ 870
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734
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Question about the appropriate uniververse for GOHyperG or hyperGtable
GO mouse4302 probe GO mouse4302 probe
updated 17.9 years ago by 65k • written 17.9 years ago by ▴ 300
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1
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886
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Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
18.0 years ago Bornman, Daniel M ▴ 110
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2.6k
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AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
18.1 years ago Wu, Xiwei ▴ 350
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1
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837
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Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 10
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2
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1.0k
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moe430v2 annotation package?
Annotation GO mouse4302 cdf probe Annotation GO mouse4302 cdf probe
updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ▴ 30
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6
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1.5k
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can't instal MetaData package "mouse4302"
Annotation mouse4302 Annotation mouse4302
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by 50k
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3
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1.1k
views
latest devel GO package not built in R2.0.0
GO mouse4302 affy annaffy GO mouse4302 affy annaffy
updated 19.6 years ago by ★ 2.9k • written 19.6 years ago by ★ 1.4k
42 results • Page 1 of 1
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Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result by Chris • 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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