Bioconductor Msigdb

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msigdb GSEABase GSVA

written 3.9 years ago by forlani.luca • 0

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1.3k

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GSEABase fgsea msigdb GeneSetEnrichment

17 months ago Assa Yeroslaviz ★ 1.5k

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672

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msigdb fgsea msig

20 months ago Tanvi • 0

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1.2k

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geneset GeneSetEnrichment msigdb

22 months ago Seongsu • 0

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1.5k

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msigdb gmt GSEA

written 23 months ago by Georg • 0

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6.5k

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ssgsea GSVA biotype proteincoding msigdb

updated 16 months ago by tifaGis • 0 • written 2.2 years ago by snijesh ▴ 200

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2.7k

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gseabase msigdb genesetcollection Tutorial

written 7.7 years ago by t.kuilman ▴ 170

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5.7k

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clusterprofiler GSEA MSIGDB

updated 7.9 years ago by Guangchuang Yu ★ 1.2k • written 7.9 years ago by thomasjenner333 • 0

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1.8k

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limma romer msigdb

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by Jon Manning ▴ 40

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1.7k

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category gostats msigdb hypergeometric test

10.6 years ago petyuk ▴ 70

10 results • Page 1 of 1

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

You are correct. Thank you for noticing some of this 'pollution' with "_2" suffixes was unnecessary. I posted an updated SILVA classifier …

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

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A: The meaning of results produced by the bamQC function implemented in the ATACseq

The meaning of results produced by the bamQC function implemented in the ATACseqQC

A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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