Bioconductor NcRNA

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computational biology molecular biology RNA r-loop ncRNA Job

6.3 years ago l.brown ▴ 10

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1.9k

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grch37 transcripts biotype biomaRt ncrna

updated 6.5 years ago by James W. MacDonald 67k • written 6.5 years ago by sergio.martinezcuesta ▴ 10

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gsea ncrna coexpression gene set analysis gene set testing

8.8 years ago m.fletcher ▴ 20

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1.4k

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biomart ncrna

updated 9.4 years ago by Thomas Maurel ▴ 800 • written 9.4 years ago by Zhang,Jiexin ▴ 20

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5.0k

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trna ncrna genomicfeatures featuredb biomart

updated 9.8 years ago by Hervé Pagès 16k • written 9.9 years ago by Keith Hughitt ▴ 180

5 results • Page 1 of 1

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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0

Oh, that's silly - thanks, will do!

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

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Comment: Unused arguments error without used arguments in GSVA?

Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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Popular Question to Malcolm Cook ★ 1.6k