Bioconductor NcRNA

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computational biology molecular biology RNA r-loop ncRNA Job

7.2 years ago l.brown ▴ 10

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grch37 transcripts biotype biomaRt ncrna

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by sergio.martinezcuesta ▴ 10

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gsea ncrna coexpression gene set analysis gene set testing

9.7 years ago m.fletcher ▴ 20

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biomart ncrna

updated 10.3 years ago by Thomas Maurel ▴ 800 • written 10.3 years ago by Zhang,Jiexin ▴ 20

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trna ncrna genomicfeatures featuredb biomart

updated 10.8 years ago by Hervé Pagès 16k • written 10.8 years ago by Keith Hughitt ▴ 180

5 results • Page 1 of 1

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

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Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Lluís Revilla Sancho ▴ 760

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20