Bioconductor NcRNA

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computational biology molecular biology RNA r-loop ncRNA Job

7.3 years ago l.brown ▴ 10

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grch37 transcripts biotype biomaRt ncrna

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by sergio.martinezcuesta ▴ 10

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gsea ncrna coexpression gene set analysis gene set testing

9.8 years ago m.fletcher ▴ 20

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biomart ncrna

updated 10.4 years ago by Thomas Maurel ▴ 800 • written 10.4 years ago by Zhang,Jiexin ▴ 20

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trna ncrna genomicfeatures featuredb biomart

updated 10.8 years ago by Hervé Pagès 16k • written 10.9 years ago by Keith Hughitt ▴ 180

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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

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Popular Question to James W. MacDonald 68k