Bioconductor Nested design

Showing : nested design • reset

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deseq2 nested design

updated 6.1 years ago by Michael Love 42k • written 6.1 years ago by katarina.truve • 0

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2.5k

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deseq2 nested design

updated 6.2 years ago by Michael Love 42k • written 6.3 years ago by xie186 • 0

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1.3k

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nested design post hoc edgeR

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by ashley.lu • 0

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1.4k

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edgeR nested design differential expression

updated 6.5 years ago by Gordon Smyth 51k • written 6.5 years ago by chiayi • 0

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1.5k

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edgeR model.matrix nested design reference group

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by ri.lars ▴ 40

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1.1k

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deseq2 multiple factor design nested design

6.8 years ago michael.steffen ▴ 20

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deseq2 multiple factor design nested design interaction term

updated 7.5 years ago by Michael Love 42k • written 7.5 years ago by zahra.aboukhalil • 0

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1.9k

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deseq2 interaction model nested design

7.6 years ago glocke01 ▴ 10

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1.6k

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edgeR removeBatchEffect nested design

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by Jenny Drnevich ★ 2.0k

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1.8k

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multifactor nested design deseq2

8.1 years ago swaegers.janne • 0

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1.7k

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edger multifactor nested design

8.3 years ago • updated 8.1 years ago swaegers.janne • 0

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1.2k

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limma edger nested design

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by xluong • 0

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2.7k

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edger differential gene expression without replicate nested design help

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by knipehf • 0

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edger nested design rnaseq

updated 9.4 years ago by Ryan C. Thompson ★ 7.9k • written 9.4 years ago by mrwarner09 • 0

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2.5k

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deseq2 Nested design random variable

updated 9.4 years ago by Michael Love 42k • written 9.4 years ago by Silva • 0

15 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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