Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
no replicates
•
reset
0
votes
0
replies
707
views
MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
5.8 years ago
nilaycan
• 0
1
vote
5
replies
3.0k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Tony
• 0
4
votes
9
replies
10k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 21 months ago by
Michael Love
41k • written 6.6 years ago by
Mahtetie
• 0
4
votes
8
replies
1.8k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
6.7 years ago
Stefany Solano
• 0
2
votes
1
reply
1.2k
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
hwick1
▴ 20
5
votes
7
replies
4.5k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
7.1 years ago
BioinfGuru
▴ 30
6 results • Page
1 of 1
Recent ...
Replies
Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Thanks Robert for an educative response!
Votes
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
Comment: Why p value inconsistent when using different number of pathway score?
Awards
• All
Popular Question
to
Matthew Ritchie
▴ 1000
Scholar
to
alserg
▴ 260
Popular Question
to
bioinf
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Leo Lahti
▴ 40
Locations
• All
France,
2 minutes ago
India,
5 minutes ago
Switzerland,
7 minutes ago
WEHI, Melbourne, Australia,
13 minutes ago
Toulouse, France,
25 minutes ago
Traffic: 726 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6