Bioconductor Qc

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387

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HTS QC

updated 3.8 years ago by shepherl 3.6k • written 3.8 years ago by Happyflower • 0

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1.6k

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flowAI flow_auto_qc QC flow cytometry

updated 4.1 years ago by gianni • 0 • written 4.1 years ago by vinko.tosevski • 0

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1.2k

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ChIP-seq ChIPQC QC

updated 4.3 years ago by zhenfeng.liu1 ▴ 20 • written 4.8 years ago by star ▴ 10

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3.2k

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scater scran singlecellexperiment normalize qc

updated 20 months ago by Dayme • 0 • written 4.6 years ago by kushshah ▴ 10

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1.1k

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singlecellexperiment rpkm normalization qc

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by kushshah ▴ 10

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1.3k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

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1.4k

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updated 8.0 years ago by James W. MacDonald 64k • written 8.0 years ago by libya.tahani • 0

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2.9k

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ChIPSeq QC ChIPQC

updated 8.3 years ago by Thomas Carroll ▴ 420 • written 8.3 years ago by Philip Lijnzaad ▴ 160

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1.9k

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affy qc simpleaffy HTA

updated 8.7 years ago by James W. MacDonald 64k • written 8.7 years ago by Guilherme Rocha ▴ 40

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1.2k

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beadarray qc

8.8 years ago meeta.mistry ▴ 30

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3.4k

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exactSNP qc variantannotation

updated 9.1 years ago by Wei Shi ★ 3.5k • written 9.1 years ago by daniel.silvestre ▴ 100

11 results • Page 1 of 1

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k