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omiccircos
•
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867
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Question about OmicCircos
OmicCircos
7.5 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.3k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
8.1 years ago
mictadlo
▴ 10
0
votes
0
replies
1.3k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
8.2 years ago
Didi
▴ 10
2
votes
3
replies
4.3k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 8.2 years ago by
yifangt
▴ 20 • written 10.8 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.6k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
8.5 years ago
matthew.bashton
• 0
0
votes
1
reply
1.9k
views
Circos Tile colors
OmicCircos
RCircos
updated 8.5 years ago by
bernatgel
▴ 150 • written 8.5 years ago by
Radek
▴ 90
0
votes
1
reply
2.8k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
8.6 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.3k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
8.8 years ago
theobroma22
▴ 10
0
votes
0
replies
1.5k
views
OmicCircos barplot height and scale
omiccircos
8.8 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
1.0k
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
8.8 years ago
Didi
▴ 10
0
votes
0
replies
1.1k
views
Zoom function in OmicCircos
OmicCircos
Zoom
8.8 years ago
abmora
• 0
0
votes
0
replies
1.0k
views
How to plot a single segment using OmicCircos?
omiccircos
9.2 years ago
Shambho
• 0
1
vote
0
replies
991
views
the 23re and 24th segs cannot be plotted
OmicCircos
9.4 years ago
magcj89
▴ 10
3
votes
2
replies
3.0k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 9.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.6 years ago by
pertille
• 0
0
votes
0
replies
1.6k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
9.8 years ago
Gary
▴ 20
0
votes
0
replies
1.8k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
10.5 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.6k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.6 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.8k
views
OmicCircos mapping data file.
omiccircos
updated 10.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.0 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
2.0k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.0 years ago by
micahgearhart
• 0
0
votes
2
replies
2.4k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 10.7 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.7 years ago by
wei.shen
• 0
0
votes
1
reply
1.7k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
10.8 years ago
Peter.Wood
• 0
21 results • Page
1 of 1
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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