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omiccircos
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859
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Question about OmicCircos
OmicCircos
7.5 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.3k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
8.0 years ago
mictadlo
▴ 10
0
votes
0
replies
1.2k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
8.1 years ago
Didi
▴ 10
2
votes
3
replies
4.2k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 8.1 years ago by
yifangt
▴ 20 • written 10.7 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.6k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
8.4 years ago
matthew.bashton
• 0
0
votes
1
reply
1.9k
views
Circos Tile colors
OmicCircos
RCircos
updated 8.5 years ago by
bernatgel
▴ 150 • written 8.5 years ago by
Radek
▴ 90
0
votes
1
reply
2.7k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
8.6 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.3k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
8.7 years ago
theobroma22
▴ 10
0
votes
0
replies
1.5k
views
OmicCircos barplot height and scale
omiccircos
8.8 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
990
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
8.8 years ago
Didi
▴ 10
0
votes
0
replies
1.1k
views
Zoom function in OmicCircos
OmicCircos
Zoom
8.8 years ago
abmora
• 0
0
votes
0
replies
1.0k
views
How to plot a single segment using OmicCircos?
omiccircos
9.1 years ago
Shambho
• 0
1
vote
0
replies
980
views
the 23re and 24th segs cannot be plotted
OmicCircos
9.3 years ago
magcj89
▴ 10
3
votes
2
replies
3.0k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 9.5 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.6 years ago by
pertille
• 0
0
votes
0
replies
1.6k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
9.8 years ago
Gary
▴ 20
0
votes
0
replies
1.8k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
10.4 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.6k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.6 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.8k
views
OmicCircos mapping data file.
omiccircos
updated 10.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.9 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
2.0k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.0 years ago by
micahgearhart
• 0
0
votes
2
replies
2.4k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 10.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.6 years ago by
wei.shen
• 0
0
votes
1
reply
1.7k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
10.7 years ago
Peter.Wood
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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