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omiccircos
•
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796
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Question about OmicCircos
OmicCircos
7.0 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.2k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
7.6 years ago
mictadlo
▴ 10
0
votes
0
replies
1.2k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
7.7 years ago
Didi
▴ 10
2
votes
3
replies
4.0k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 7.7 years ago by
yifangt
▴ 20 • written 10.3 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.5k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
8.0 years ago
matthew.bashton
• 0
0
votes
1
reply
1.9k
views
Circos Tile colors
OmicCircos
RCircos
updated 8.0 years ago by
bernatgel
▴ 150 • written 8.0 years ago by
Radek
▴ 90
0
votes
1
reply
2.6k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
8.1 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.3k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
8.3 years ago
theobroma22
▴ 10
0
votes
0
replies
1.5k
views
OmicCircos barplot height and scale
omiccircos
8.3 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
931
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
8.3 years ago
Didi
▴ 10
0
votes
0
replies
1.0k
views
Zoom function in OmicCircos
OmicCircos
Zoom
8.3 years ago
abmora
• 0
0
votes
0
replies
951
views
How to plot a single segment using OmicCircos?
omiccircos
8.7 years ago
Shambho
• 0
1
vote
0
replies
919
views
the 23re and 24th segs cannot be plotted
OmicCircos
8.9 years ago
magcj89
▴ 10
3
votes
2
replies
2.9k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 9.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.1 years ago by
pertille
• 0
0
votes
0
replies
1.5k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
9.3 years ago
Gary
▴ 20
0
votes
0
replies
1.7k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
10.0 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.5k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.1 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.7k
views
OmicCircos mapping data file.
omiccircos
updated 10.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.5 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
1.9k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.5 years ago by
micahgearhart
• 0
0
votes
2
replies
2.3k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 10.2 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.2 years ago by
wei.shen
• 0
0
votes
1
reply
1.6k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
10.3 years ago
Peter.Wood
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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