Bioconductor Output

Showing : output • reset

votes

replies

909

views

output difference

2.5 years ago Jamie • 0

votes

replies

2.1k

views

msa decipher output prettyPrint

updated 4.3 years ago by UBod ▴ 300 • written 4.3 years ago by matamunee • 0

votes

replies

1.8k

views

genesis output score

updated 5.2 years ago by Stephanie M. Gogarten ▴ 870 • written 5.2 years ago by lassana.a.samarakoon ▴ 10

votes

replies

1.5k

views

MEDIPS Output

6.6 years ago vjain • 0

votes

replies

4.6k

views

voomWithQualityWeights output

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by harelarik ▴ 60

vote

2.0k

views

limma voom edgeR toptable output

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by heikki.sarin ▴ 10

votes

replies

3.8k

views

msa alignement output sorted

7.9 years ago Olorin ▴ 50

votes

replies

1.5k

views

cytofkit cytof write.csv output

updated 8.1 years ago by chen_hao ▴ 30 • written 8.1 years ago by cjackson13 • 0

votes

replies

6.7k

views

deseq2 gene columns output

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by amyfm ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

Awards • All