Bioconductor Output

Showing : output • reset

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1.3k

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output difference

3.6 years ago Jamie • 0

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2.7k

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msa decipher output prettyPrint

updated 5.4 years ago by UBod ▴ 300 • written 5.4 years ago by matamunee • 0

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2.3k

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genesis output score

updated 6.3 years ago by Stephanie M. Gogarten ▴ 890 • written 6.3 years ago by lassana.a.samarakoon ▴ 10

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1.9k

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MEDIPS Output

7.7 years ago vjain • 0

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5.2k

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voomWithQualityWeights output

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by harelarik ▴ 60

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limma voom edgeR toptable output

updated 8.5 years ago by Aaron Lun ★ 29k • written 8.5 years ago by heikki.sarin ▴ 10

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msa alignement output sorted

9.0 years ago Olorin ▴ 50

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1.8k

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cytofkit cytof write.csv output

updated 9.2 years ago by chen_hao ▴ 30 • written 9.2 years ago by cjackson13 • 0

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7.4k

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deseq2 gene columns output

updated 10.2 years ago by Michael Love 43k • written 10.2 years ago by amyfm ▴ 10

9 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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