Bioconductor Output

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941

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output difference

2.6 years ago Jamie • 0

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2.2k

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msa decipher output prettyPrint

updated 4.4 years ago by UBod ▴ 300 • written 4.4 years ago by matamunee • 0

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1.8k

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genesis output score

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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MEDIPS Output

6.8 years ago vjain • 0

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4.7k

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voomWithQualityWeights output

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by harelarik ▴ 60

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2.0k

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limma voom edgeR toptable output

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by heikki.sarin ▴ 10

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3.9k

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msa alignement output sorted

8.0 years ago Olorin ▴ 50

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1.5k

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cytofkit cytof write.csv output

updated 8.3 years ago by chen_hao ▴ 30 • written 8.3 years ago by cjackson13 • 0

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6.8k

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deseq2 gene columns output

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by amyfm ▴ 10

9 results • Page 1 of 1

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k