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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
22 months ago
Jamie
• 0
0
votes
3
replies
1.7k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.6 years ago by
UBod
▴ 290 • written 3.6 years ago by
matamunee
• 0
3
votes
6
replies
1.4k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.6 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.3k
views
MEDIPS - Annotation output explanation
MEDIPS
Output
6.0 years ago
vjain
• 0
2
votes
8
replies
4.2k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.4 years ago by
Gordon Smyth
50k • written 6.4 years ago by
harelarik
▴ 60
1
vote
1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
3.2k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.2 years ago
Olorin
▴ 50
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.5 years ago by
chen_hao
▴ 30 • written 7.5 years ago by
cjackson13
• 0
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.5 years ago by
Michael Love
41k • written 8.5 years ago by
amyfm
▴ 10
9 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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