Showing : pRoloc • reset
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Job: Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc proteomics Spatial Proteomics MassSpectrometry
2.8 years ago Laurent Gatto 1.6k
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pROLOC phenoDisco running extra interations, but not finishing cluster analysis
pRoloc phenoDisco
updated 5.9 years ago by 1.6k • written 5.9 years ago by • 0
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pRoloc - phenoDisco - issue with example
pRoloc phenoDisco fcol
updated 6.4 years ago by 1.6k • written 6.4 years ago by • 0
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Problems with cholesky decomposition in pRoloc package
pRoloc machine learning cholesky
6.8 years ago robinkretz • 0
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Error in parameter setting using svmOptimisation for pRoloc analysis
bioconductor proloc
updated 7.8 years ago by 1.6k • written 7.8 years ago by • 0
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Trouble using addMarkers from pRoloc on my own dataset
proloc proteomics msnset
7.9 years ago moldach ▴ 20
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Using Human Protein Atlas annotations with pRoloc to interpretate subcellular location
pRoloc annotation subcellular location
updated 7.9 years ago by 1.6k • written 7.9 years ago by ▴ 20
7 results • Page 1 of 1
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Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit by Mark • 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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