Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
pacbio
•
reset
0
votes
2
replies
529
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 15 months ago by
lhaiyan3
• 0
0
votes
1
reply
1.6k
views
How to read in PacBio .bam.pbi file
pacbio
pbi
5.9 years ago
Frocha
▴ 20
0
votes
28
replies
3.1k
views
Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
6.0 years ago
bgee
• 0
4
votes
3
replies
1.4k
views
The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread
pacbio
fastq
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
benjamin.j.callahan
▴ 50
2
votes
5
replies
1.9k
views
Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz
bam
pacbio
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.8 years ago by
thackl
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: DEG Filtering
by
Amit
• 0
Hello Gordon, The PCA plot for RMA normalized data shows Mixing of samples. Is it Batch Effect ? Because when I apply ARSyNseq() and again …
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
James W. MacDonald
65k
Let's take a closer look. ``` > library(GEOquery) ## some random data > getGEOSuppFiles("GSE193983") > setwd("GSE193983/") > untar("GSE19…
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Votes
Comment: DEG Filtering
Answer: DEG Filtering
Answer: DEG Filtering
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
Awards
• All
Scholar
to
James W. MacDonald
65k
Scholar
to
Gordon Smyth
50k
Popular Question
to
rocanja
▴ 60
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Locations
• All
United States,
10 minutes ago
Belgium,
12 minutes ago
United States,
17 minutes ago
France,
22 minutes ago
United States,
27 minutes ago
Traffic: 743 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6