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piano
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9
votes
7
replies
20k
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Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 5 months ago by
amin8w
▴ 10 • written 6.8 years ago by
sina.nassiri
▴ 130
3
votes
8
replies
2.5k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy
limma
piano
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
abolfazl.nikakhtar
• 0
0
votes
5
replies
2.3k
views
loadGSC() Piano package
piano
updated 9.2 years ago by
Leif Väremo
▴ 70 • written 9.2 years ago by
nonCodingGene
▴ 10
0
votes
9
replies
1.7k
views
unable to load rsbml for piano reporter metabolite analysis
rsbml
piano
libsbml
gene set enrichment analysis
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
jan.strauss
• 0
0
votes
3
replies
1.7k
views
piano runGSA with input from DESEQ2
deseq2
gene ontology
piano
7.5 years ago
simonp.snoeck
• 0
3
votes
3
replies
1.7k
views
Error while running piano's runGSA
piano
runGSA
updated 8.0 years ago by
Leif Väremo
▴ 70 • written 8.0 years ago by
rubi
▴ 110
2
votes
4
replies
1.3k
views
Running time of piano's runGSA
piano
runGSA
runtime
updated 7.3 years ago by
Leif Väremo
▴ 70 • written 7.3 years ago by
rubi
▴ 110
2
votes
2
replies
1.2k
views
Using GeneSetCollection objects of GSEABase in piano package
piano
gseabase
7.3 years ago
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
1.2k
views
Mixing list from Piano package output
Piano
List
updated 9.1 years ago by
Leif Väremo
▴ 70 • written 9.1 years ago by
nonCodingGene
▴ 10
3
votes
2
replies
1.1k
views
How is microarray normalization done in PIANO?
piano
microarray
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
rf
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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Koen Van den Berge
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