Showing : plier • reset
0
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8
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1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
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6
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1.4k
views
Affy EXON Array: iterPLIER or RMA
Cancer plier Cancer plier
updated 17.0 years ago by 65k • written 17.0 years ago by ★ 1.9k
0
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5
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1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by ▴ 60
0
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4
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1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
0
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3
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962
views
Standard error in summarization ExpressionSets
plier plier
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 10
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3
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2.6k
views
what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 19.8 years ago by ▴ 100 • written 19.8 years ago by ▴ 10
0
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3
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1.2k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier plier
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 30
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3
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1.1k
views
Anyone get plier to install on OS X?
plier plier
18.9 years ago Ken Termiso ▴ 250
0
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2
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981
views
Running justRMA on .CEL files in another directory
plier plier
updated 20.0 years ago by ▴ 70 • written 20.0 years ago by ▴ 50
0
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2
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1.1k
views
plier error
plier plier
updated 17.7 years ago by ★ 1.1k • written 17.7 years ago by ▴ 360
0
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2
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964
views
PLIER: two questions
plier plier
updated 18.8 years ago by ★ 1.8k • written 18.8 years ago by ▴ 380
0
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2
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1.5k
views
results of justPlier vs. RMA
Clustering affy plier affyio Clustering affy plier affyio
updated 17.5 years ago by ▴ 120 • written 17.5 years ago by ▴ 360
0
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2
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909
views
Affy PLIER
plier plier
updated 19.6 years ago by ★ 2.3k • written 19.6 years ago by ★ 1.4k
0
votes
2
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776
views
Affymetrix question
plier plier
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 50
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votes
2
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1.0k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf plier cdf plier
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 140
0
votes
1
reply
749
views
PLIER -- low values?
Microarray plier Microarray plier
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 190
0
votes
1
reply
915
views
AFFY PLIER ALGORITHM
plier plier
20.1 years ago Anthony Bosco ▴ 500
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1
reply
1.1k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
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1
reply
1.1k
views
PLIER Error
plier plier
updated 19.2 years ago by ★ 1.1k • written 19.2 years ago by ▴ 500
0
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1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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1
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1.1k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO vsn plier GO vsn plier
updated 14.0 years ago by ▴ 230 • written 14.1 years ago by ▴ 830
0
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1
reply
1.2k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization vsn plier Normalization vsn plier
updated 15.9 years ago by ★ 6.0k • written 15.9 years ago by ▴ 20
0
votes
1
reply
867
views
plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
19.1 years ago Adaikalavan Ramasamy ★ 1.8k
0
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1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 320
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1
reply
755
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn gcrma matchprobes plier vsn gcrma matchprobes plier
updated 18.7 years ago by 65k • written 18.7 years ago by ▴ 350
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1
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884
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 18.6 years ago by 65k • written 18.6 years ago by ▴ 80
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1
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1.1k
views
PLIER is available as open source
plier SANTA plier SANTA
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ▴ 50
0
votes
1
reply
868
views
Mismatch probe handling for exon arrays
Cancer Breast probe affy plier Cancer Breast probe affy plier
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 310
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0
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966
views
Affymetrix gene st array - ok to do statistics on Category:Main only?
limma plier oligo limma plier oligo
11.7 years ago Martin O'Hare ▴ 10
0
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0
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861
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
18.6 years ago Matthew Hannah ▴ 940
0
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0
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1.1k
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median polish vs mas/PLIER info
Microarray Normalization Cancer probe affy GeneSpring PROcess plier Microarray Cancer
20.0 years ago Anthony Bosco ▴ 500
0
votes
0
replies
799
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization probe affycomp plier Normalization probe affycomp plier
19.3 years ago Ariel Chernomoretz ▴ 380
0
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0
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813
views
PLIER
plier plier
19.2 years ago Crispin Miller ★ 1.1k
0
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0
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645
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Re:PLIER wierd Mvs A
plier plier
19.2 years ago Anthony Bosco ▴ 20
0
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0
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1.3k
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NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
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0
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709
views
help with justPlier
plier plier
17.7 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
0
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824
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questions on BioC's implementation of plier
Normalization plier Normalization plier
17.3 years ago Jenny Drnevich ★ 2.2k
0
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0
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766
views
justPlier() on UNIX
plier plier
16.9 years ago Pickard, Mike ▴ 10
0
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0
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953
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.7 years ago Wolfgang Raffelsberger ▴ 160
0
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0
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849
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plier using reference set normalization
Normalization plier RefPlus Normalization plier RefPlus
16.2 years ago Roumyana Yordanova ▴ 110
0
votes
0
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782
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XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
11.9 years ago cstrato ★ 3.9k
0
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0
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759
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plier package
Normalization cdf plier Normalization cdf plier
11.8 years ago fire1976 wyoming ▴ 380
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0
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1.1k
views
FARMS package (fwd)
Microarray Normalization cdf plier farms Microarray Normalization cdf plier farms
11.8 years ago Günter Klambauer ▴ 540
0
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0
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941
views
Question regarding bg correction/normalization/summarization
Normalization Cancer probe affy vsn plier Normalization Cancer probe affy vsn plier
19.8 years ago Wolfgang Huber ★ 13k
44 results • Page 1 of 1
Recent ...
Replies
Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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