Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
plotMA
•
reset
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.7 years ago
aravenscraft
• 0
1
vote
2
replies
961
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
CantExitVIM
▴ 10
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
sjs0282
• 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Lisa Cohen
▴ 50
1
vote
5
replies
627
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
41k • written 7 months ago by
sara.jacobson
• 0
1
vote
8
replies
2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.6 years ago
Yvan Wenger
▴ 50
1
vote
1
reply
621
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
l.troxler
▴ 10
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
ap_vc21
• 0
0
votes
1
reply
889
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
chaco001
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM()
by
mat149
▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Awards
• All
Popular Question
to
tangming2005
▴ 190
Popular Question
to
Ian D.
▴ 70
Popular Question
to
junhui.li11
• 0
Scholar
to
James W. MacDonald
65k
Popular Question
to
jeffrey.maurer
• 0
Locations
• All
Denver, University of Colorado Anschutz Medical Campus,
2 minutes ago
United States,
7 minutes ago
United States,
11 minutes ago
United States,
13 minutes ago
United States,
13 minutes ago
Traffic: 659 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6