Bioconductor PlotPCA

Showing : plotPCA • reset

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898

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Rstudio plotPCA DESeq2

14 months ago yee • 0

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1.1k

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plotMA ggplot2 plotPCA DESeq2

updated 16 months ago by Michael Love 43k • written 16 months ago by sara.jacobson • 0

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plotPCA PCA

updated 22 months ago by hediatnani • 0 • written 22 months ago by Yijing • 0

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DESeq2 plotPCA

updated 8 months ago by Daniele • 0 • written 3.0 years ago by synat.keam • 0

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plotpca DESeq2

3.1 years ago bjen731 ▴ 10

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.8 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by s1760083 • 0

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1.3k

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deseq2 biplot plotpca

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by ecg1g15 ▴ 30

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809

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deseq2 PlotPCA draw.triple.venn

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by N. Perera • 0

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809

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deseq2 plotpca

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by lirongrossmann ▴ 80

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.4 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

7.5 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 8.1 years ago by Federico Marini ▴ 180 • written 8.1 years ago by al-ash ▴ 50

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pca plotpca

8.3 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

8.7 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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