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plotPCA
•
reset
0
votes
2
replies
1.3k
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
23 months ago
yee
• 0
1
vote
5
replies
1.5k
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 2.1 years ago by
Michael Love
43k • written 2.1 years ago by
sara.jacobson
• 0
0
votes
3
replies
6.2k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 2.6 years ago by
hediatnani
• 0 • written 2.6 years ago by
Yijing
• 0
3
votes
5
replies
3.6k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 17 months ago by
Daniele
• 0 • written 3.8 years ago by
synat.keam
• 0
3
votes
3
replies
10k
views
Adding sample label to PCA plot
plotpca
DESeq2
3.8 years ago
bjen731
▴ 10
2
votes
2
replies
2.1k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
4.5 years ago
elizabethe819
• 0
1
vote
1
reply
1.3k
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
s1760083
• 0
0
votes
3
replies
1.6k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
ecg1g15
▴ 30
0
votes
1
reply
929
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
N. Perera
• 0
0
votes
1
reply
964
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
snp31
• 0
12
votes
1
reply
8.4k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 8.1 years ago by
Michael Love
43k • written 8.1 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
4.1k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
8.1 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.8k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
8.3 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
50k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 8.8 years ago by
Federico Marini
▴ 180 • written 8.8 years ago by
al-ash
▴ 50
0
votes
0
replies
1.2k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
9.1 years ago
marianarochadesouza
• 0
0
votes
3
replies
2.0k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
9.5 years ago
newsomew13
• 0
16 results • Page
1 of 1
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Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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by
Kevin Blighe
★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
Kevin Blighe
★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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