Bioconductor PlotPCA

Showing : plotPCA • reset

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843

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Rstudio plotPCA DESeq2

13 months ago yee • 0

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1.1k

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plotMA ggplot2 plotPCA DESeq2

updated 15 months ago by Michael Love 43k • written 15 months ago by sara.jacobson • 0

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5.0k

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plotPCA PCA

updated 21 months ago by hediatnani • 0 • written 21 months ago by Yijing • 0

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3.1k

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DESeq2 plotPCA

updated 6 months ago by Daniele • 0 • written 2.9 years ago by synat.keam • 0

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8.6k

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plotpca DESeq2

3.0 years ago bjen731 ▴ 10

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1.7k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.7 years ago elizabethe819 • 0

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1.1k

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DESeq2 RNASeq plotpca

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by s1760083 • 0

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1.3k

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deseq2 biplot plotpca

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by ecg1g15 ▴ 30

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797

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deseq2 PlotPCA draw.triple.venn

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by N. Perera • 0

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777

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deseq2 plotpca

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by snp31 • 0

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7.9k

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deseq2 plotpca PCa

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by lirongrossmann ▴ 80

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3.7k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.3 years ago lirongrossmann ▴ 80

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3.5k

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DESeq2 plotPCA rlog transformation vsd

7.4 years ago Jane Merlevede ▴ 90

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46k

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plotPCA deseq2 labels

updated 8.0 years ago by Federico Marini ▴ 180 • written 8.0 years ago by al-ash ▴ 50

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pca plotpca

8.2 years ago marianarochadesouza • 0

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1.7k

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deseq2 plotPCA PCA rna-seq

8.6 years ago newsomew13 • 0

16 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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