Bioconductor PlotPCA

Showing : plotPCA • reset

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1.4k

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Rstudio plotPCA DESeq2

2.2 years ago • updated 2.1 years ago yee • 0

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1.7k

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plotMA ggplot2 plotPCA DESeq2

updated 2.3 years ago by Michael Love 43k • written 2.3 years ago by sara.jacobson • 0

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6.4k

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plotPCA PCA

updated 2.8 years ago by hediatnani • 0 • written 2.8 years ago by Yijing • 0

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3.8k

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DESeq2 plotPCA

updated 19 months ago by Daniele • 0 • written 4.0 years ago by synat.keam • 0

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plotpca DESeq2

4.0 years ago bjen731 ▴ 10

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2.2k

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plotPCA DESeq2 RUVSeq removebatcheffect()

4.7 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by s1760083 • 0

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1.7k

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deseq2 biplot plotpca

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by ecg1g15 ▴ 30

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979

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deseq2 PlotPCA draw.triple.venn

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by N. Perera • 0

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deseq2 plotpca

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by lirongrossmann ▴ 80

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deseq2 rlog variancestabilizingtransformation plotpca pca

8.3 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

8.5 years ago Jane Merlevede ▴ 90

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50k

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plotPCA deseq2 labels

updated 9.0 years ago by Federico Marini ▴ 180 • written 9.0 years ago by al-ash ▴ 50

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pca plotpca

9.3 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

9.7 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Votes

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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