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plotPCA
•
reset
0
votes
2
replies
1.2k
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
21 months ago
yee
• 0
1
vote
5
replies
1.4k
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 23 months ago by
Michael Love
43k • written 23 months ago by
sara.jacobson
• 0
0
votes
3
replies
6.0k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 2.4 years ago by
hediatnani
• 0 • written 2.5 years ago by
Yijing
• 0
3
votes
5
replies
3.5k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 15 months ago by
Daniele
• 0 • written 3.6 years ago by
synat.keam
• 0
3
votes
3
replies
10k
views
Adding sample label to PCA plot
plotpca
DESeq2
3.7 years ago • updated 3.6 years ago
bjen731
▴ 10
2
votes
2
replies
2.0k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
4.3 years ago
elizabethe819
• 0
1
vote
1
reply
1.3k
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
s1760083
• 0
0
votes
3
replies
1.5k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
ecg1g15
▴ 30
0
votes
1
reply
887
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
N. Perera
• 0
0
votes
1
reply
939
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
snp31
• 0
12
votes
1
reply
8.4k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
4.0k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
7.9 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.7k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
8.1 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
49k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 8.7 years ago by
Federico Marini
▴ 180 • written 8.7 years ago by
al-ash
▴ 50
0
votes
0
replies
1.2k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
8.9 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.9k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
9.3 years ago
newsomew13
• 0
16 results • Page
1 of 1
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Replies
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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