Bioconductor PlotPCA

Showing : plotPCA • reset

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928

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Rstudio plotPCA DESeq2

15 months ago • updated 14 months ago yee • 0

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1.1k

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plotMA ggplot2 plotPCA DESeq2

updated 16 months ago by Michael Love 43k • written 16 months ago by sara.jacobson • 0

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5.4k

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plotPCA PCA

updated 22 months ago by hediatnani • 0 • written 23 months ago by Yijing • 0

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3.2k

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DESeq2 plotPCA

updated 8 months ago by Daniele • 0 • written 3.1 years ago by synat.keam • 0

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9.2k

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plotpca DESeq2

3.1 years ago bjen731 ▴ 10

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1.8k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.8 years ago elizabethe819 • 0

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1.1k

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DESeq2 RNASeq plotpca

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by s1760083 • 0

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1.4k

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deseq2 biplot plotpca

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by ecg1g15 ▴ 30

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817

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deseq2 PlotPCA draw.triple.venn

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by N. Perera • 0

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818

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deseq2 plotpca

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by lirongrossmann ▴ 80

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3.8k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.4 years ago lirongrossmann ▴ 80

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3.5k

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DESeq2 plotPCA rlog transformation vsd

7.6 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 8.1 years ago by Federico Marini ▴ 180 • written 8.1 years ago by al-ash ▴ 50

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pca plotpca

8.4 years ago marianarochadesouza • 0

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1.8k

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deseq2 plotPCA PCA rna-seq

8.8 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

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Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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