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plotPCA
•
reset
0
votes
2
replies
371
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
5 months ago
yee
• 0
1
vote
5
replies
640
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
41k • written 7 months ago by
sara.jacobson
• 0
0
votes
3
replies
3.1k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 13 months ago by
hediatnani
• 0 • written 13 months ago by
Yijing
• 0
2
votes
4
replies
2.3k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
2.3 years ago • updated 2.1 years ago
synat.keam
• 0
3
votes
3
replies
6.4k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.3 years ago
bjen731
▴ 10
2
votes
2
replies
1.4k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.0 years ago
elizabethe819
• 0
1
vote
1
reply
875
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
s1760083
• 0
0
votes
3
replies
1.0k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
ecg1g15
▴ 20
0
votes
1
reply
644
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
N. Perera
• 0
0
votes
1
reply
613
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
snp31
• 0
12
votes
1
reply
7.1k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.2k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.6 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
6.8 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
41k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.3 years ago by
Federico Marini
▴ 150 • written 7.3 years ago by
al-ash
▴ 50
0
votes
0
replies
973
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.6 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.5k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.0 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges
by
Michael Love
41k
https://support.bioconductor.org/p/73432/#73448
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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