Showing : plotcounts • reset
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2 PlotCounts
21 months ago annamariabugaj ▴ 10
1
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4
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2.3k
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plotCounts to visualize variations of a specific genes along conditions
DESeq2 plotCounts vst
updated 2.1 years ago by 42k • written 2.1 years ago by ▴ 10
0
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2
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1.9k
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How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2 plotCounts
updated 3.5 years ago by 42k • written 3.5 years ago by • 0
0
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1
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1.2k
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Deseq2 how to get input data for plotCounts for a single gene
deseq2 plotcounts
updated 4.5 years ago by 42k • written 4.5 years ago by • 0
0
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1
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1.6k
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plot statistic values in a DEseq2 plotCounts plot
deseq2 plotCounts pvalues RNAseq
updated 4.8 years ago by 42k • written 4.8 years ago by • 0
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3
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2.3k
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Change order of conditions when plotting: plotCounts {DESeq2}
R deseq2 plotcounts
5.5 years ago ecg1g15 ▴ 30
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5
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Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2 plotCounts rowRanges
updated 6.3 years ago by 42k • written 6.3 years ago by ▴ 50
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
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A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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