Bioconductor Plotcounts

Showing : plotcounts • reset

vote

replies

3.1k

views

DESeq2 PlotCounts

2.9 years ago annamariabugaj ▴ 10

vote

replies

3.4k

views

DESeq2 plotCounts vst

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by Laia ▴ 10

votes

replies

2.5k

views

DESeq2 plotCounts

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by elizabethe819 • 0

votes

1.4k

views

deseq2 plotcounts

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by sunthomas • 0

votes

1.9k

views

deseq2 plotCounts pvalues RNAseq

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by anne.hoffrichter • 0

votes

replies

2.7k

views

R deseq2 plotcounts

6.7 years ago ecg1g15 ▴ 30

votes

replies

2.2k

views

deseq2 plotCounts rowRanges

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by I.Castanho ▴ 50

7 results • Page 1 of 1

Recent ...

Replies

Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All