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plotma
•
reset
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.2 years ago by
Michael Love
42k • written 8.2 years ago by
sjs0282
• 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
Lisa Cohen
▴ 50
1
vote
8
replies
2.7k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.7 years ago
Yvan Wenger
▴ 50
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.8 years ago
aravenscraft
• 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
ap_vc21
• 0
1
vote
2
replies
978
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 6.0 years ago by
Gordon Smyth
50k • written 6.0 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
905
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.2 years ago by
Michael Love
42k • written 4.3 years ago by
chaco001
• 0
1
vote
5
replies
676
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
42k • written 7 months ago by
sara.jacobson
• 0
1
vote
1
reply
636
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.1 years ago by
Michael Love
42k • written 3.1 years ago by
l.troxler
▴ 10
10 results • Page
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Replies
Answer: ChAMP not available for bioconductor 3.19
by
ATpoint
★ 4.2k
https://support.bioconductor.org/p/9158324/#9158336
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Comment: GSVA function
by
michelafrancesconi8
• 0
When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…
Comment: Normalisation using clinical traits in RNA seq using DESeq2
by
sukeshinik5
• 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be avail…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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kevin.rue
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Wei Shi
★ 3.6k
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50k
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