Bioconductor Plotpca

Showing : plotpca • reset

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3.2k

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.6 years ago lirongrossmann ▴ 80

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614

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plotMA ggplot2 plotPCA DESeq2

updated 6 months ago by Michael Love 41k • written 6 months ago by sara.jacobson • 0

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41k

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plotPCA deseq2 labels

updated 7.3 years ago by Federico Marini ▴ 150 • written 7.3 years ago by al-ash ▴ 50

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2.3k

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DESeq2 plotPCA

2.2 years ago • updated 2.1 years ago synat.keam • 0

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DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

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1.5k

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deseq2 plotPCA PCA rna-seq

7.9 years ago newsomew13 • 0

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deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by ecg1g15 ▴ 20

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plotPCA PCA

updated 12 months ago by hediatnani • 0 • written 13 months ago by Yijing • 0

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plotpca DESeq2

2.3 years ago bjen731 ▴ 10

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1.3k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

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345

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Rstudio plotPCA DESeq2

5 months ago • updated 4 months ago yee • 0

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869

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DESeq2 RNASeq plotpca

updated 3.2 years ago by Michael Love 41k • written 3.2 years ago by s1760083 • 0

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639

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deseq2 PlotPCA draw.triple.venn

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by N. Perera • 0

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604

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deseq2 plotpca

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by lirongrossmann ▴ 80

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970

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pca plotpca

7.6 years ago marianarochadesouza • 0

16 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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