Showing : probe • reset
0
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1.3k
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Howto Get GO/Gene-names of GEO-Soft Probe-names
GO probe GO probe
updated 17.3 years ago by ▴ 830 • written 17.3 years ago by ▴ 230
0
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3
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2.1k
views
illumina annotation packages vs. bgx manifests
Annotation illuminaRatv1 lumiRatV1 probe Annotation illuminaRatv1 lumiRatV1 probe
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ▴ 60
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0
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928
views
X:Map and 1.0 ST Gene Arrays, Introns
Coverage probe Coverage probe
17.3 years ago Thomas Hampton ▴ 750
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0
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875
views
Bioconductor Digest, Vol 65, Issue 23
cdf probe affy gcrma cdf probe affy gcrma
17.3 years ago Manhong Dai ▴ 200
0
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0
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1.5k
views
confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
17.3 years ago Lynn Amon ▴ 280
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1.6k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
17.3 years ago Martin Morgan 25k
0
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1
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2.5k
views
Question about 'annFUN.db' in topGO ....
GO probe topGO GO probe topGO
updated 17.3 years ago by ▴ 730 • written 17.3 years ago by ▴ 170
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3
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1.3k
views
Drosophila tiling array background correction
cdf probe oligo cdf probe oligo
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 30
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1
reply
1.7k
views
Dealing with multiple probes per gene and multiple locations per probe.
Annotation GO probe affy Annotation GO probe affy
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 100
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863
views
GC-content sensitive normalization of Affymetrix tiling arrays for ChIP-chip
Normalization probe gcrma Normalization probe gcrma
17.3 years ago Siobhan A. Braybrook ▴ 60
0
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890
views
affyQCReport and +ve/-ve border elements
GO probe GO probe
17.3 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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857
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combining samples before normalization
Normalization moe430a probe Normalization moe430a probe
17.3 years ago Lana Schaffer ★ 1.3k
0
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3
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1.6k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 17.4 years ago by ▴ 730 • written 17.4 years ago by ▴ 110
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0
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928
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Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
17.4 years ago Henrik Bengtsson ★ 2.4k
0
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3
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1.1k
views
error retrieving normalized probe values from "pm" array
probe probe
17.4 years ago Lana Schaffer ★ 1.3k
0
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2
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1.5k
views
AffyBatch boxplot and histograms
probe probe
17.4 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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0
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996
views
Change of default normalization method in lumiN ( lumi package )
Normalization probe lumi Normalization probe lumi
17.4 years ago Pan Du ★ 1.2k
0
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0
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1.4k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
17.4 years ago Nick Henriquez ▴ 20
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1
reply
1.2k
views
Asking again: AnnotationDbi and GOstats - feed probe names to hyperGTest?
Annotation probe Annotation probe
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 130
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2
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861
views
arabidopsis annotate mget problem
probe probe
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 60
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5
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2.5k
views
Limma time course analysis - defining comparisons
GO probe limma GO probe limma
17.4 years ago Helen Zhou ▴ 150
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4
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1.5k
views
a question about LIMMA
Microarray probe limma Microarray probe limma
updated 17.4 years ago by ▴ 250 • written 17.4 years ago by 53k
0
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0
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1.0k
views
goTools package - extract genes
GO probe goTools GO probe goTools
17.4 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
0
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1
reply
1.0k
views
lumiHumanAll.db, Gostats
Annotation Clustering probe convert Annotation Clustering probe convert
updated 17.4 years ago by ▴ 270 • written 17.4 years ago by ★ 1.2k
0
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1
reply
844
views
How I can extract the information of Probe and Probesets location on the microarray
cdf probe cdf probe
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
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10
replies
2.2k
views
using genomic DNA as universal reference
probe probe
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 890
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0
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869
views
Using limma with Agilent array data
Microarray Normalization probe limma Microarray Normalization probe limma
17.4 years ago Gordon Smyth 53k
0
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0
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746
views
Averaging irregular replicate spots in limma
probe limma probe limma
17.4 years ago Gordon Smyth 53k
0
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2
replies
1.2k
views
CDF properties
cdf probe cdf probe
updated 17.4 years ago by ▴ 950 • written 17.4 years ago by ▴ 70
0
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0
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883
views
lumi annotation package
Annotation lumiHumanV1 lumiMouseV1 lumiHumanV2 probe lumi Annotation lumiHumanV1 probe
17.4 years ago Pan Du ★ 1.2k
0
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2
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2.2k
views
Mapping KEGG pathway to GO term ID for Illumina gene expression data
GO probe GO probe
updated 17.4 years ago by 21k • written 17.5 years ago by ▴ 640
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0
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1.2k
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
17.5 years ago Heidi Dvinge ★ 2.0k
0
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0
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731
views
Probes vs Genes/Targets for Illumina BeadChips
probe probe
17.5 years ago Cei Abreu-Goodger ▴ 830
0
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0
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742
views
Issues with lumiMouseAll.db vs lumiMouseV1
Annotation probe lumi Annotation probe lumi
17.5 years ago Cei Abreu-Goodger ▴ 830
0
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3
replies
1.8k
views
Specific annotation information from ExpressionSet
Annotation Cancer probe Annotation Cancer probe
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 1.9k
0
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0
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1.3k
views
Obtaining Raw Intensity Values and Metadata for Exon Arrays in xps
probe probe
17.5 years ago Stephen Piccolo ▴ 600
0
votes
1
reply
994
views
lumiMouseV1 trouble
GO lumiMouseV1 probe GO lumiMouseV1 probe
updated 17.5 years ago by ★ 1.2k • written 17.5 years ago by ▴ 350
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5
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2.4k
views
converting gene name to affy probe
probe convert biomaRt probe convert biomaRt
17.5 years ago Ruppert Valentino ▴ 270
0
votes
2
replies
1.1k
views
gcRMA: problem compute.affinities.local on gngnf1musa
Annotation probe gcrma Annotation probe gcrma
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 90
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0
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815
views
question about LIMMA
probe limma probe limma
17.5 years ago Erika Melissari ▴ 250
1
vote
4
replies
5.6k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.5 years ago Hans-Ulrich Klein ▴ 330
0
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0
replies
900
views
warning message of lumiR
Microarray Annotation probe convert lumi Microarray Annotation probe convert lumi
17.5 years ago Pan Du ★ 1.2k
0
votes
2
replies
847
views
computation of average of all probes but not the actual
probe probe
updated 17.5 years ago by 16k • written 17.5 years ago by ▴ 320
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0
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867
views
select genes above a threshold from a table having multiple probes
probe probe
17.5 years ago Thomas Girke ★ 1.7k
0
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5
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1.6k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 2.0k
0
votes
1
reply
905
views
select genes from a table above a threshold
probe probe
updated 17.5 years ago by ★ 1.7k • written 17.5 years ago by ▴ 320
0
votes
1
reply
992
views
splicing in Affymetrix
GO probe GO probe
updated 17.5 years ago by ▴ 110 • written 17.5 years ago by ▴ 320
0
votes
1
reply
1.6k
views
About Illumina annotation packages lumixxxAll.db
Annotation lumiMouseV1 probe convert lumi Annotation lumiMouseV1 probe convert lumi
17.5 years ago Pan Du ★ 1.2k
0
votes
1
reply
778
views
Limma: import files with genes missing
Annotation Cancer probe limma ASSIGN Annotation Cancer probe limma ASSIGN
17.6 years ago Gordon Smyth 53k
0
votes
0
replies
798
views
Limma: import files with genes missing
Cancer probe limma Cancer probe limma
17.6 years ago Daniel Brewer ★ 1.9k
1,388 results • Page 16 of 28
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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