Showing : probe • reset
0
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902
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Help with sub setting data frame of DE genes
GO hgu133a probe GO hgu133a probe
updated 17.6 years ago by ▴ 730 • written 17.6 years ago by ▴ 300
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1
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967
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row.names in the latest vsn
probe vsn probe vsn
updated 17.6 years ago by ▴ 110 • written 17.6 years ago by ★ 13k
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2
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2.3k
views
GO-Analysis using TopGO for Yeast2 data
Annotation GO yeast2 probe topGO Annotation GO yeast2 probe topGO
updated 17.6 years ago by ★ 7.2k • written 17.6 years ago by ▴ 10
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1
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1.3k
views
get probe level intensity from Affymetrix Exon
probe probe
updated 17.7 years ago by ★ 1.0k • written 17.7 years ago by ▴ 500
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3
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1.0k
views
get probe level intensity from Affymetrix Exon Array platform
probe probe
updated 17.7 years ago by 68k • written 17.7 years ago by ★ 1.0k
0
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3
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2.1k
views
Application of multiple testing correction in the context of using Stouffer's method for combing p-values
Microarray hgu133a probe Microarray hgu133a probe
updated 17.7 years ago by ▴ 340 • written 17.7 years ago by ▴ 300
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2
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1.5k
views
CodeLink Probe ID in new Annoation Package different from the NCBI GEO?
Annotation h20kcod probe Annotation h20kcod probe
updated 17.7 years ago by ▴ 80 • written 17.7 years ago by 21k
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1
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1.5k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by ▴ 110
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1
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1.1k
views
What should happen to control probe information in bead level Illumina analyses?
probe probe
updated 17.7 years ago by ▴ 410 • written 17.7 years ago by ▴ 270
0
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1
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866
views
custom CDF with GC-RMA
cdf probe affy cdf probe affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 30
0
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780
views
What should happen to control probe information in beadlevel Illumina analyses?
probe probe
17.7 years ago Simon Lin ▴ 270
0
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2
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1.1k
views
Why is my matrix transposed?
probe probe
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 70
0
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1
reply
615
views
justGCRMA() error message
probe affy probe affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 10
0
votes
1
reply
779
views
normalized probes
Normalization probe Normalization probe
updated 17.7 years ago by 68k • written 17.7 years ago by ★ 1.3k
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0
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498
views
passing in parameters to annotation packages (e.g hgu95av2)
Annotation Cancer probe Annotation Cancer probe
17.7 years ago Martin Morgan 25k
0
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2
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1.3k
views
probe file for custom array
Microarray Cancer cdf probe gcrma matchprobes Microarray Cancer cdf probe gcrma
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by 68k
0
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0
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979
views
How to remove some probes from one probeset in the begining?
cdf probe cdf probe
17.7 years ago pkuonline ▴ 30
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1
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1.0k
views
gcrma with hgu133a and hgu133a2
cdf probe gcrma cdf probe gcrma
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 40
0
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4
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1.1k
views
probe file for custom array
probe probe
updated 17.7 years ago by 68k • written 17.7 years ago by ★ 1.3k
0
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1
reply
860
views
Background analysis on
probe probe
updated 17.7 years ago by ▴ 10 • written 17.7 years ago by ▴ 300
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3
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1.7k
views
PGSEA question
probe PGSEA probe PGSEA
updated 17.7 years ago by ▴ 210 • written 17.7 years ago by ▴ 70
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0
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1.3k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene 1.0 ST Array
Microarray cdf probe affy convert Microarray cdf probe affy convert
17.7 years ago Fang, Hong* ▴ 30
0
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0
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1.2k
views
About Lumi nuID NAs
Annotation lumiMouseV1 probe lumi Annotation lumiMouseV1 probe lumi
17.7 years ago Pan Du ★ 1.2k
0
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1
reply
817
views
Restore lost mm probes in an altcdfenv?
cdf probe cdf probe
updated 17.7 years ago by ▴ 950 • written 17.7 years ago by ▴ 10
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5
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2.4k
views
Help needed with CopyNumber analysis for Affymetrix 250K arrays
Normalization probe copynumber Normalization probe copynumber
updated 17.8 years ago by ★ 2.4k • written 17.8 years ago by ▴ 270
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784
views
of limma and superfluous arrays
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
17.8 years ago Yannick Wurm ▴ 220
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854
views
of limma and superfluous arrays
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
17.8 years ago Gordon Smyth 53k
0
votes
1
reply
804
views
multi-experiment multi-chip summarization
GO probe affy GO probe affy
updated 17.8 years ago by ★ 2.4k • written 17.8 years ago by ▴ 10
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2
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2.1k
views
RMA median polish to a matrix
probe probe
updated 17.8 years ago by ★ 1.2k • written 17.8 years ago by ▴ 140
0
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1
reply
1.1k
views
BGX Output Help
probe probe
updated 17.8 years ago by ★ 6.5k • written 17.8 years ago by ▴ 160
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0
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1.3k
views
Analysis of Affy-data from amplified RNA
probe ROC probe ROC
17.8 years ago Rafael A. Irizarry ★ 2.3k
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1
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1.4k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 17.9 years ago by ★ 13k • written 17.9 years ago by 25k
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0
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1.2k
views
Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
17.9 years ago Teresa Colombo ▴ 10
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2.0k
views
limma: decideTests
limma probe affy
17.9 years ago • updated 2.8 years ago Gordon Smyth 53k
0
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1
reply
814
views
Second pass at gcrma error
probe probe
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 20
0
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0
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902
views
PCA methods for probe level data
probe affy convert probe affy convert
18.0 years ago James W. MacDonald 68k
0
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1
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824
views
coerce matrix to aafTable
probe probe
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 510
0
votes
1
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798
views
rma normalization and more
Normalization probe Normalization probe
updated 18.0 years ago by ★ 1.2k • written 18.0 years ago by ★ 1.2k
0
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2
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1.2k
views
getting the pm and mm indices
probe probe
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 90
0
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1
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872
views
Variable probe binding and its impact on analysis
Microarray probe Microarray probe
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 600
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2
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1.3k
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Combine dataset from different chip
Microarray probe Microarray probe
18.0 years ago Tom ▴ 20
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2
replies
1.5k
views
Problem running eBayes/lmFit
probe probe
18.0 years ago elliot harrison ▴ 230
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3
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1.4k
views
Using beadarray for bead level data, what is the ProbeID with 1000's of beads?
probe beadarray probe beadarray
updated 18.0 years ago by ★ 3.6k • written 18.0 years ago by ▴ 270
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931
views
Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
18.0 years ago Ester Feldmesser ▴ 60
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5
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1.7k
views
Subsetting data from RGList (Again)
probe probe
18.0 years ago elliot harrison ▴ 230
0
votes
2
replies
1.0k
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 18.0 years ago by ▴ 120 • written 18.0 years ago by ▴ 10
0
votes
2
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988
views
Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 410
0
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5
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1.5k
views
lumi: how is the controlData to be read and used?
probe lumi probe lumi
updated 18.0 years ago by 53k • written 18.0 years ago by ★ 1.2k
0
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0
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984
views
lumi: how is the controlData to be read and used?
probe lumi probe lumi
18.0 years ago Gordon Smyth 53k
0
votes
2
replies
1.2k
views
Illumina annotation packages
Annotation probe Annotation probe
updated 18.1 years ago by ▴ 280 • written 18.1 years ago by ▴ 70
1,388 results • Page 17 of 28
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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