Showing : probe • reset
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2 Test Samples on 1 Array
probe probe
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 230
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2
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923
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hugene10stv1probe?
cdf probe cdf probe
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 50
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1
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748
views
VSN: narrowing down probe sets for parameter estimation
Microarray probe vsn Microarray probe vsn
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ▴ 50
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8
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2.7k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
18.1 years ago jhs1jjm@leeds.ac.uk ▴ 230
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1.2k
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clustering methods for gene expression
Microarray Clustering probe limma Microarray Clustering probe limma
18.1 years ago Donna Toleno ▴ 90
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2
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2.3k
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Agilent 4x44 single color expression arrays
Normalization probe vsn limma gcrma Normalization probe vsn limma gcrma
18.1 years ago Ido M. Tamir ▴ 320
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810
views
FW: how to 'bootstrap' expression data?
qPCR GO probe qPCR GO probe
18.1 years ago Johnstone, Alice ▴ 410
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1.1k
views
Newbie Problems with Agilent data
GO probe limma GO probe limma
18.1 years ago elliot harrison ▴ 230
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1.0k
views
limma questions (normalization)
Microarray Normalization probe limma Microarray Normalization probe limma
18.2 years ago Gordon Smyth 53k
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1.2k
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Microarray Workshop in Tucson, January 2008
Microarray probe Microarray probe
18.2 years ago David Henderson ▴ 100
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1
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1.0k
views
GCRMA works for my updated cdf and probesequence files.
cdf probe gcrma cdf probe gcrma
updated 18.2 years ago by ▴ 450 • written 18.2 years ago by ▴ 130
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1.3k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
18.2 years ago Yan Zhang ▴ 130
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1.9k
views
Limma: Very high logFC values
Preprocessing probe vsn limma Preprocessing probe vsn limma
18.2 years ago Gordon Smyth 53k
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0
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978
views
how to install updated CDF package and probe package in R to run GCRMA?
cdf probe gcrma cdf probe gcrma
18.2 years ago Yan Zhang ▴ 130
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818
views
marrayRaw class using read.Agilent function
probe probe
18.2 years ago jhs1jjm@leeds.ac.uk ▴ 230
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1
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1.4k
views
Question about inconsistent gene expression
Microarray Cancer hgu133plus2 probe affy limma gcrma Microarray Cancer hgu133plus2 probe
updated 18.2 years ago by ▴ 120 • written 18.2 years ago by ▴ 40
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1
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925
views
appropriate statistical test for post-array analysis
probe oligo probe oligo
updated 18.2 years ago by ★ 6.0k • written 18.2 years ago by ▴ 100
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2
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1.5k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 18.2 years ago by ★ 7.2k • written 18.2 years ago by ▴ 30
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5
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1.8k
views
AnnBuilder problem with custom List of genes
Annotation Organism probe AnnBuilder Annotation Organism probe AnnBuilder
18.2 years ago claudio.is@libero.it ▴ 210
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2
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924
views
"all" category in annotation data
GO probe affy GO probe affy
updated 18.3 years ago by 16k • written 18.3 years ago by ▴ 50
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560
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usage of "all" category in annotation data
GO probe affy GO probe affy
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 10
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2
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1.4k
views
simpleaffy QCstats and affyQAReport repost
zebrafish probe affy zebrafish probe affy
updated 18.3 years ago by ★ 1.1k • written 18.3 years ago by ▴ 70
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734
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problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.3 years ago Gordon Smyth 53k
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1.2k
views
problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.3 years ago De-Jian ZHAO ▴ 240
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935
views
question about RMA's background adjustment...
probe affy probe affy
18.3 years ago Jenny Drnevich ★ 2.2k
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1
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1.1k
views
AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM
Annotation GO probe annotate AnnBuilder Annotation GO probe annotate AnnBuilder
updated 18.4 years ago by ★ 7.2k • written 18.4 years ago by ▴ 10
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9
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2.5k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 90
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802
views
goTools: ontoCompare question
probe probe
18.4 years ago davidl@unr.nevada.edu ▴ 140
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3
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1.0k
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map probe to refseq and select 3' biased one
probe affy probe affy
updated 18.4 years ago by 21k • written 18.4 years ago by ★ 1.2k
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961
views
(no subject)
probe sscore probe sscore
18.4 years ago Marie-Paule Roth ▴ 40
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1
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1.1k
views
AnnBuilder and tab delimited files annotation
Annotation probe AnnBuilder Annotation probe AnnBuilder
updated 18.4 years ago by 21k • written 18.4 years ago by ▴ 500
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2
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1.7k
views
se.exprs extractor question
probe affy affyio probe affy affyio
updated 18.4 years ago by ▴ 390 • written 18.4 years ago by ▴ 120
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1.1k
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
18.4 years ago lidaof ▴ 450
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6
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1.5k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 18.4 years ago by 68k • written 18.4 years ago by ★ 1.3k
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1.2k
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How to identify corrupt Affy CEL file?
probe probe
18.5 years ago Henrik Bengtsson ★ 2.4k
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10
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2.5k
views
limma reading Agilent One-Color Data
probe limma probe limma
updated 18.5 years ago by ▴ 470 • written 18.5 years ago by 53k
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5
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1.7k
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from using biomaRt and r10kcod
r10kcod probe PROcess convert codelink r10kcod probe PROcess convert codelink
updated 18.5 years ago by ▴ 760 • written 18.5 years ago by ★ 1.2k
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5
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2.5k
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GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 110
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5
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1.7k
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limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by 53k
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743
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limma question: direct two-color design & modeling individual subject effects
probe limma probe limma
18.5 years ago Paul Shannon ★ 1.1k
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3
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1.7k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.6 years ago by ▴ 870 • written 18.6 years ago by 68k
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6
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1.3k
views
Point plot against labels and reordering
Cancer probe Cancer probe
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 1.9k
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1
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1.2k
views
RMA error on exon arrays
Normalization Breast cdf probe PROcess Normalization Breast cdf probe PROcess
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 500
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1.3k
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Ranking genes according to tissue specificity
probe affy gcrma probe affy gcrma
18.6 years ago Cei Abreu-Goodger ▴ 830
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5
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1.6k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 18.6 years ago by ★ 6.5k • written 18.6 years ago by ▴ 830
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1
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1.1k
views
Problems in AnnBuilder package function ABPkgBuilder
Annotation GO rat2302 probe Biobase annotate AnnBuilder PROcess Annotation GO rat2302
updated 18.6 years ago by ▴ 870 • written 18.6 years ago by ▴ 70
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3
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1.5k
views
annotations for Codelink arrays
Annotation GO Cancer r10kcod probe AnnBuilder PROcess biomaRt codelink Annotation GO
updated 18.6 years ago by ▴ 760 • written 18.6 years ago by ★ 1.2k
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3
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1.2k
views
probe expression profile to gene expression profile
probe PROcess probe PROcess
updated 18.6 years ago by 21k • written 18.6 years ago by ★ 1.2k
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1
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836
views
LIMMA P-value calculations/Suggestions for flagged data
probe limma probe limma
18.7 years ago • updated 18.6 years ago Gordon Smyth 53k
0
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1.3k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.6 years ago Dick Beyer ★ 1.4k
1,388 results • Page 18 of 28
Recent ...
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
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