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process
•
reset
4
votes
8
replies
1.8k
views
Designing a model matrix and further process?
limma
annotation
R
process
6.8 years ago
Biotechuos4
• 0
3
votes
3
replies
1.4k
views
EBImage: filtering in the presence of NAs
PROcess
EBImage
PROcess
EBImage
updated 11.2 years ago by
Wolfgang Huber
★ 13k • written 11.2 years ago by
Arnaud Duranel
▴ 60
2
votes
6
replies
9.6k
views
GEOquery: how to extract experimental data? (confused)
PROcess
GEOquery
PROcess
GEOquery
updated 12.7 years ago by
Dai, Hongying,
▴ 60 • written 12.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
2
votes
3
replies
2.1k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism
PROcess
biomaRt
GenomicFeatures
Organism
PROcess
biomaRt
GenomicFeatures
updated 13.7 years ago by
Steve Lianoglou
★ 13k • written 13.7 years ago by
shirley zhang
★ 1.0k
2
votes
4
replies
6.3k
views
Too many (?) differentially expressed genes - edgeR and DESeq
PROcess
edgeR
DESeq
PROcess
edgeR
DESeq
updated 10.8 years ago by
Wolfgang Huber
★ 13k • written 10.8 years ago by
Darya Vanichkina
▴ 120
2
votes
9
replies
3.4k
views
GEOquery error
Annotation
PROcess
Annotation
PROcess
updated 8.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.0 years ago by
James W. MacDonald
65k
1
vote
1
reply
2.3k
views
How to hide or suppress note about ward method in clValid package?
Annotation
PROcess
Annotation
PROcess
updated 9.8 years ago by
Julian Gehring
★ 1.3k • written 9.8 years ago by
Guest User
★ 13k
1
vote
2
replies
5.9k
views
read .mat file in R
process
updated 9.6 years ago by
Peter Langfelder
★ 3.0k • written 9.6 years ago by
s.kazemi.n
• 0
1
vote
3
replies
1.5k
views
RMA on Exon Array NaN values
Normalization
PROcess
Normalization
PROcess
updated 10.2 years ago by
Benilton Carvalho
★ 4.3k • written 10.2 years ago by
Nicolas Servant
▴ 40
1
vote
2
replies
1.0k
views
deleted questions.. as its not very relevant..
process
6.8 years ago • updated 6.7 years ago
bioDoctorate
• 0
1
vote
9
replies
2.8k
views
BLAST search sequence for species ID from R?
Biostrings
PROcess
Biostrings
PROcess
updated 14.4 years ago by
Michael Dondrup
▴ 550 • written 14.4 years ago by
jos matejus
▴ 40
1
vote
0
replies
767
views
GSEA with one class metaanalysis
PROcess
PROcess
17.2 years ago
Gordon Smyth
50k
1
vote
0
replies
882
views
RmiR, request for new package
miRNA
Annotation
GO
cdf
probe
PROcess
Category
miRNA
Annotation
GO
cdf
probe
PROcess
15.2 years ago
Nishant Gopalakrishnan
▴ 340
0
votes
0
replies
1.7k
views
getSeq human genomic sequences
Annotation
Cancer
BSgenome
PROcess
GLAD
BSgenome
IRanges
Annotation
Cancer
BSgenome
GLAD
15.3 years ago
Hervé Pagès
16k
0
votes
1
reply
2.8k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
16.5 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
845
views
ABPkgBuilder Error; Again
Annotation
GO
Cancer
Organism
Biobase
annotate
AnnBuilder
PROcess
Annotation
GO
Cancer
18.7 years ago
Barry Henderson
▴ 250
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 16.7 years ago by
Steffen
▴ 500 • written 16.7 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
763
views
dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray
Normalization
Preprocessing
Cancer
hgu133plus2
probe
affy
limma
PROcess
Cancer
17.3 years ago
Henrik Bengtsson
★ 2.4k
0
votes
0
replies
970
views
FW: makecdfenv()
GO
cdf
PROcess
altcdfenvs
GO
cdf
PROcess
altcdfenvs
19.8 years ago
Lana Schaffer
▴ 80
0
votes
0
replies
750
views
Re: [R] Source package installation for WinXPpro
Microarray
Cancer
affy
PROcess
Microarray
Cancer
affy
PROcess
20.6 years ago
James W. MacDonald
65k
0
votes
2
replies
1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray
cdf
affy
makecdfenv
PROcess
oligo
cycle
Microarray
cdf
affy
makecdfenv
oligo
updated 12.3 years ago by
James W. MacDonald
65k • written 12.3 years ago by
Groot, Philip de
▴ 630
0
votes
1
reply
1.5k
views
Summarising Probe Sets for Agilent 4x44 Arrays
Clustering
probe
PROcess
Clustering
probe
PROcess
updated 12.4 years ago by
Francois Pepin
▴ 80 • written 12.4 years ago by
Samantha Jane England
▴ 10
0
votes
4
replies
1.4k
views
use of duplicateCorrelation in Limma with agilent one-color arrays
limma
PROcess
limma
PROcess
updated 12.2 years ago by
Gordon Smyth
50k • written 12.2 years ago by
Jabez Wilson
▴ 150
0
votes
1
reply
1.3k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess
flowWorkspace
PROcess
flowWorkspace
updated 12.0 years ago by
Nikolas
▴ 30 • written 12.1 years ago by
Greg Finak
▴ 240
0
votes
5
replies
2.4k
views
EasyRNASeq issue (missing bai files)
GO
PROcess
DESeq
easyRNASeq
GO
PROcess
DESeq
easyRNASeq
updated 11.8 years ago by
Jorge Beira
▴ 10 • written 11.8 years ago by
delhomme@embl.de
★ 1.2k
0
votes
5
replies
1.3k
views
Visualizing the region of classification uncertainty on thresholded images
PROcess
PROcess
updated 11.7 years ago by
Alex Gutteridge
▴ 650 • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Fwd: ASSIST on contrast matrix
Network
Homo sapiens
limma
PROcess
Network
Homo sapiens
limma
PROcess
11.7 years ago
Seyed Ahmad Mousavi
▴ 10
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
11.5 years ago
McGee, Monnie
▴ 300
0
votes
3
replies
3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification
Cancer
PROcess
Classification
Cancer
PROcess
updated 11.4 years ago by
Sean Davis
21k • written 11.4 years ago by
McGee, Monnie
▴ 300
0
votes
7
replies
3.6k
views
Weird things happening with minfi and RcppEigen
PROcess
minfi
PROcess
minfi
updated 11.4 years ago by
Benilton Carvalho
★ 4.3k • written 11.4 years ago by
Gustavo Fernández Bayón
▴ 440
0
votes
0
replies
940
views
FDA soliciting proposals to analyze gene expression datasets
Microarray
Pharmacogenomics
PROcess
Microarray
Pharmacogenomics
PROcess
18.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess
DNAcopy
cghMCR
PROcess
DNAcopy
cghMCR
12.6 years ago
viritha kaza
▴ 580
0
votes
0
replies
996
views
FW: normalization one color microarrays
Normalization
hgug4112a
PROcess
Agi4x44PreProcess
Normalization
hgug4112a
PROcess
12.7 years ago
Paz Tapia Ramirez
▴ 150
0
votes
1
reply
1.1k
views
Issues with BioC GO annotations and NetAffx
Annotation
GO
probe
affy
PROcess
GOstats
Category
Annotation
GO
probe
affy
PROcess
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Bornman, Daniel M
▴ 110
0
votes
4
replies
1.1k
views
win 64bit and general BioC computing power?
GO
Clustering
affy
limma
gcrma
PROcess
GO
Clustering
affy
limma
gcrma
PROcess
updated 19.9 years ago by
Liaw, Andy
▴ 360 • written 19.9 years ago by
Matthew Hannah
▴ 940
0
votes
0
replies
1.2k
views
R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero
GO
probe
PROcess
frma
GO
probe
PROcess
frma
9.8 years ago
Matthew McCall
▴ 830
0
votes
2
replies
1.7k
views
preparing sequencing data for use with anota
Sequencing
Normalization
PROcess
anota
Sequencing
Normalization
PROcess
anota
updated 8.7 years ago by
kesarwani.anil
• 0 • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
Question about 'updateCel' from package 'affxparser'
cdf
PROcess
affxparser
cdf
PROcess
affxparser
12.7 years ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
961
views
Affymetrix exon arrays?
Normalization
Cancer
Breast
cdf
affy
PROcess
Normalization
Cancer
Breast
cdf
affy
updated 17.6 years ago by
Jesse Salisbury
▴ 20 • written 17.6 years ago by
Steven McKinney
▴ 310
0
votes
4
replies
1.9k
views
peer review process for bioconductor packages
PROcess
PROcess
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.0k
views
(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO
Yeast
cdf
genefilter
affy
PROcess
GO
Yeast
cdf
genefilter
affy
PROcess
22.0 years ago
julien.sylvestre@wotan.ens.fr
▴ 50
0
votes
2
replies
1.3k
views
affy expression values
Proteomics
affy
PROcess
Proteomics
affy
PROcess
updated 21.8 years ago by
Rafael A. Irizarry
▴ 640 • written 21.8 years ago by
Larry
▴ 10
0
votes
1
reply
1.0k
views
Annotation for Nonspecificity of Affymetrix Probes?
probe
PROcess
probe
PROcess
updated 21.8 years ago by
rgentleman
★ 5.5k • written 21.8 years ago by
Jeff Sorenson
▴ 70
0
votes
1
reply
988
views
Problem whit Affy
GO
cdf
probe
PROcess
GO
cdf
probe
PROcess
updated 21.7 years ago by
Rafael A. Irizarry
▴ 640 • written 21.7 years ago by
Remo Sanges
▴ 10
0
votes
6
replies
1.3k
views
request for letter of support
PROcess
PROcess
updated 21.5 years ago by
Hinnerk Boriss
▴ 220 • written 21.5 years ago by
rgentleman
★ 5.5k
0
votes
1
reply
1.3k
views
Job Posting in Biostatistics/Statistics
Bayesian
Survival
Cancer
PROcess
ASSET
Bayesian
Survival
Cancer
PROcess
ASSET
updated 21.4 years ago by
Johannes Hüsing
▴ 80 • written 21.4 years ago by
Janusz Kawczak
▴ 10
0
votes
0
replies
780
views
protien and peptide mass spectrometry
genefilter
PROcess
genefilter
PROcess
21.3 years ago
Nicholas Lewin-Koh
▴ 430
0
votes
0
replies
586
views
Widget option enabled:Thank you
PROcess
PROcess
21.3 years ago
Tapan Mehta
▴ 270
0
votes
0
replies
1.3k
views
InfoVis 2003 Call for Papers
Visualization
PROcess
Category
Visualization
PROcess
Category
21.3 years ago
rgentleman
★ 5.5k
0
votes
3
replies
2.2k
views
Getting GO ids for genenames in plasmodium falciparum
GO
Plasmodium falciparum
PROcess
convert
GO
Plasmodium falciparum
PROcess
convert
updated 10.6 years ago by
Martin Morgan
25k • written 10.6 years ago by
Guest User
★ 13k
50 results • Page
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Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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