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prostar
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Problems with Prostar v1.26.4 - issue with convert data prior to filtering
Prostar
4.0 years ago • updated 3.9 years ago
benoit.marchand
• 0
1
vote
5
replies
1.7k
views
Need help for ProStaR Stand-alone install
Prostar
updated 3.6 years ago by
Wang
• 0 • written 4.1 years ago by
benoit.marchand
• 0
0
votes
0
replies
1.1k
views
Extracting p-value table in Prostar
prostar
proteomics
7.6 years ago
laural710
• 0
1
vote
3
replies
1.9k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 7.6 years ago by
Samuel Wieczorek
▴ 10 • written 7.6 years ago by
lolli.langan
▴ 20
0
votes
3
replies
1.8k
views
Prostar (query on GO analysis)
Prostar
Dapar
clusterprofiler
updated 7.7 years ago by
Samuel Wieczorek
▴ 10 • written 7.7 years ago by
laural710
• 0
0
votes
1
reply
1.5k
views
Prostar and DAPAR installation
install error
package installation
DAPAR
prostar
R version 3.4.4
7.8 years ago
rita.reig
• 0
0
votes
2
replies
1.7k
views
Query regarding Prostar
Prostar
updated 8.2 years ago by
Samuel Wieczorek
▴ 10 • written 9.3 years ago by
kamal.fartiyal84
▴ 10
0
votes
3
replies
1.8k
views
ProStaR Not working, gives error in code?
Prostar
DAPAR
software error
updated 8.2 years ago by
Samuel Wieczorek
▴ 10 • written 8.2 years ago by
van.theodorakis
• 0
8 results • Page
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Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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