Showing : proteomics • reset
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
12.2 years ago Sarah JugurnauthLittle ▴ 20
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Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 70
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Regarding Limma differential expression.
Proteomics limma Proteomics limma
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 10
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Bioinformatics Position Opening
Proteomics Infrastructure Proteomics Infrastructure
12.9 years ago Thomas Girke ★ 1.7k
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Overrepresentation pathway with KEGGPROFILE and SPIA
Proteomics Pathways KEGGprofile Proteomics Pathways KEGGprofile
12.9 years ago slzhao ▴ 10
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Fwd: rTANDEM package -- An R encapsulation of the X!Tandem algorithm
Proteomics trigger rTANDEM Proteomics trigger rTANDEM
12.9 years ago Frederic Fournier ▴ 40
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rTANDEM package -- An R encapsulation of the X!Tandem algorithm
Proteomics rTANDEM Proteomics rTANDEM
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 40
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DESeq package
Proteomics DESeq Proteomics DESeq
updated 13.1 years ago by ▴ 550 • written 13.1 years ago by ▴ 20
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PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
13.1 years ago Norman Pavelka ▴ 140
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Bioinformatics Academic Coordinator Job Posting
Proteomics Infrastructure Proteomics Infrastructure
13.3 years ago Guest User ★ 13k
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Using limma for quantitative proteomics data
Microarray Proteomics limma Microarray Proteomics limma
13.4 years ago Yong Li ▴ 80
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2012 Bioconductor European Developers' Workshop - annoucement
Proteomics Infrastructure Proteomics Infrastructure
13.4 years ago Mark Robinson ▴ 880
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Open PhD Position - Bioinformatics in collaboration with SAP
Proteomics Proteomics
13.5 years ago Amin Moghaddasi ▴ 130
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Error loading charm
Proteomics Proteomics
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 110
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Open Position - Academic Coordinator for Bioinformatics
Proteomics Infrastructure Proteomics Infrastructure
13.6 years ago Thomas Girke ★ 1.7k
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Import Bam index (Rsamtools)
Proteomics Rsamtools Proteomics Rsamtools
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 110
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warning in lumi
Proteomics lumi Proteomics lumi
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 110
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Possible bug in SNPchip
Proteomics SNPchip Proteomics SNPchip
updated 14.0 years ago by ▴ 250 • written 14.0 years ago by ▴ 110
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VanillaICE
Proteomics VanillaICE Proteomics VanillaICE
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 110
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.0 years ago Dan Tenenbaum ★ 8.2k
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Computational biologist positions at the PICR
Proteomics Cancer Proteomics Cancer
14.1 years ago Crispin Miller ★ 1.1k
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European Developers's Workshop 2011
Proteomics Cancer Proteomics Cancer
14.2 years ago Crispin Miller ★ 1.1k
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Bioconductor European Developers' Workshop, Manchester 2011
Proteomics Cancer Proteomics Cancer
14.2 years ago Crispin Miller ★ 1.1k
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PhD student in Bioinformatics, Computational Biology at Technical University of Munich, Germany
Proteomics Pathways Proteomics Pathways
14.3 years ago Amin Moghaddasi ▴ 130
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IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
14.7 years ago Dick Beyer ★ 1.4k
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Problems with IlluminaHumanMethylation27k.db
Proteomics Proteomics
14.7 years ago Francesco Mancuso ▴ 110
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Chromosome information in MethyLumiM object
Proteomics Proteomics
updated 14.8 years ago by ★ 4.2k • written 14.8 years ago by ▴ 110
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package for protein MS analysis (SELDI-TOF)
Proteomics GO PROcess Proteomics GO PROcess
updated 14.8 years ago by 1.6k • written 14.8 years ago by ★ 4.1k
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Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 15.1 years ago by ▴ 120 • written 15.1 years ago by ▴ 70
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Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
Proteomics Proteomics
15.1 years ago Wolfgang Huber ★ 13k
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Bioinformatic Core Facility wiki at SIB
Proteomics Proteomics
15.4 years ago Francesco Mancuso ▴ 40
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CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics CAMERA Proteomics CAMERA
15.5 years ago Amandeep Sidhu ▴ 20
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CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics CAMERA Proteomics CAMERA
15.6 years ago Amandeep Sidhu ▴ 20
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edgeR: pseudocounts, logConc and logFC
Proteomics graph edgeR Proteomics graph edgeR
updated 15.6 years ago by ★ 1.1k • written 15.6 years ago by ▴ 340
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PCA or concordance
Proteomics Proteomics
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 80
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Bioconductor Digest, Vol 84, Issue 19
Proteomics Proteomics
updated 15.7 years ago by 25k • written 15.7 years ago by ★ 1.4k
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Statistical Position Supporting Systems Biology
Genetics Proteomics Genetics Proteomics
15.8 years ago Max Kuhn ▴ 60
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Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
16.6 years ago Paul Hammer ▴ 220
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Research positions available in neuroproteomics
Proteomics Infrastructure Proteomics Infrastructure
16.7 years ago Abhilash Venu ▴ 340
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
16.9 years ago Dick Beyer ★ 1.4k
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Bimodal Distrinbution
Proteomics Proteomics
updated 16.9 years ago by ▴ 120 • written 16.9 years ago by ▴ 20
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ANNOUNCEMENT: 20% Discount on Books from Chapman & Hall/CRC!
Proteomics Cancer Proteomics Cancer
17.3 years ago • updated 17.2 years ago Thomas, Judy ▴ 40
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How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
17.3 years ago anna freni sterrantino ▴ 120
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How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
17.3 years ago Chanchal Kumar ▴ 130
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DAnTE: Statistical Tool using R and R(D)COM
Proteomics Normalization GUI Proteomics Normalization GUI
17.3 years ago Ashoka Polpitiya ▴ 10
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Subtracting batch effect with Limma
Proteomics limma Proteomics limma
17.4 years ago Paul ChristophSchröder ▴ 70
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open Junior group leader position, Medical University of Innsbruck, Austria
Proteomics Cancer microRNA tRanslatome Proteomics Cancer microRNA tRanslatome
17.5 years ago Johannes Rainer ▴ 300
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Bioinformatics Faculty Position available at UCSF Cancer Center
Proteomics Cancer Proteomics Cancer
17.5 years ago Ru-Fang Yeh ▴ 20
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1.6k
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Bioinformatics Positions, M. D. Anderson Cancer Center
Proteomics Cancer Proteomics Cancer
17.6 years ago caiwei@mdanderson.org ▴ 110
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GeneSetCollection from GSEA
Proteomics GSEABase Proteomics GSEABase
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 70
235 results • Page 4 of 5
Recent ...
Replies
Answer: Post translational modifications and phosphoproteomics in limpa? by Gordon Smyth 53k
Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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