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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif
scanning
enrich_motifs
PWM
2.3 years ago
alexandre.blais
▴ 50
0
votes
0
replies
788
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.4 years ago
rbronste
▴ 60
2
votes
0
replies
1.6k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 5.3 years ago by
Bioconductor Community
0 • written 5.4 years ago by
chrisclarkson100
▴ 50
2
votes
1
reply
2.3k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.6 years ago by
Ge Tan
▴ 20 • written 6.6 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
1.2k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 7.5 years ago by
Marcel Ramos
690 • written 7.5 years ago by
clausdkuhn
• 0
0
votes
0
replies
847
views
maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings
pwm
7.7 years ago
Stefanie Tauber
▴ 40
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.5 years ago
vinod.acear
▴ 50
7 results • Page
1 of 1
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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