Bioconductor R packages

Showing : r packages • reset

votes

replies

8.3k

views

r packages centos7 bioclite libxml2

updated 7.3 years ago by Pariksheet Nanda ▴ 120 • written 7.3 years ago by kai.karius ▴ 10

votes

replies

1.5k

views

r packages somaticsignatures variantannotation

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by solo7773 ▴ 10

votes

replies

917

views

R annotation bioconductor r packages

8.5 years ago mcaulfield • 0

votes

replies

6.0k

views

bioconductor r packages installation

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by Sara ▴ 20

votes

replies

2.5k

views

website r packages importing

8.7 years ago george.carlisle • 0

votes

replies

2.3k

views

r packages submission

8.9 years ago Jurat Shahidin ▴ 80

votes

replies

6.3k

views

Bioconductor biocLite R packages oldversion

9.1 years ago svlachavas ▴ 840

7 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

Awards • All