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rdavidwebservice
•
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13
votes
35
replies
18k
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RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 6.6 years ago by
gevermalc
• 0 • written 9.6 years ago by
Vivek.b
▴ 100
3
votes
8
replies
11k
views
RDAVIDWebService - Unable to sendViaPost to url etc etc - server time out
software error
david
rdavidwebservice
updated 9.5 years ago by
oops324
• 0 • written 9.9 years ago by
TriS
▴ 200
4
votes
6
replies
3.5k
views
A good alternative for RDavidWebService ??
functional annotation
KEGG
RDavidWebService
9.7 years ago
alakatos
▴ 130
1
vote
4
replies
5.1k
views
Authentication issues to RDAVIDWebService
RDAVIDWebService
9.4 years ago
alon.goren
• 0
0
votes
4
replies
2.3k
views
Reg : Package RDAVIDWebService not connecting to DAVID-WS
RDAVIDWebService
RDAVIDWebService
11.3 years ago
Fazulur Rehaman
▴ 50
3
votes
7
replies
2.7k
views
DESeq2 error when attempting to normalize counts
deseq2
RDAVIDWebService
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
snamjoshi87
▴ 40
4
votes
1
reply
3.0k
views
OFFICIAL_GENE_SYMBOL not an available idType in RDAVIDWebService
rdavidwebservice
updated 10.0 years ago by
James W. MacDonald
68k • written 10.0 years ago by
chang02_23
▴ 30
0
votes
1
reply
2.1k
views
RDAVIDWebService Package - Uploading a gene list using data()
rdavidwebservice
david
differential gene expression
annotation
updated 10.1 years ago by
Dan Tenenbaum
★ 8.2k • written 10.1 years ago by
hpw9
• 0
0
votes
2
replies
1.9k
views
GO-Pathways using RDAVIDWebService
Pathways
Homo sapiens
RDAVIDWebService
Pathways
Homo sapiens
RDAVIDWebService
updated 11.0 years ago by
Cristobal Fresno Rodríguez
▴ 370 • written 11.0 years ago by
Fazulur Rehaman
▴ 50
1
vote
1
reply
1.6k
views
DAVIDWebService$new(): Error: .jinit(...) == 0 is not TRUE
rdavidwebservice
9.8 years ago
Aditya
▴ 160
0
votes
0
replies
1.1k
views
RDAVIDWebService - unable to use getFunctionalAnnotationChart with "count = 0"
rdavidwebservice
david
6.5 years ago
rdalbanus
• 0
0
votes
0
replies
976
views
RDAVIDWebService Package Official Gene Symbol IDs in GO Term Tables
RDAVIDWebService
Gene Ontology
GOTerm
biomaRt
4.6 years ago
ra711
• 0
0
votes
1
reply
3.2k
views
RDAVIDWebService Connection or outbound has closed
Bioconductor
RDAVIDWebService
updated 4.3 years ago by
arta.seyedian
▴ 10 • written 4.3 years ago by
Didi
▴ 10
0
votes
0
replies
1.3k
views
Rjava proxy configuration ?
rJAVA
java
proxy
connectiontimeout
rdavidwebservice
8.8 years ago
Julien FOURET
• 0
1
vote
0
replies
1.2k
views
How can I connect to DAVID 6.8 Beta through RDAVIDWebService
RDAVIDWebService
david
8.6 years ago
umut.caglar
▴ 10
0
votes
0
replies
1.3k
views
Error running demoList1
RDAVIDWebService
8.6 years ago
camult
• 0
0
votes
0
replies
1.4k
views
RDAVIDWebService Input Incorrect
rdavidwebservice
sgd_id
7.9 years ago
johntoomey
• 0
17 results • Page
1 of 1
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Replies
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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