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reference
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2
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585
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Tximport missing values for group summarizing counts
tximport
rat
reference
GTF
salmon
2.6 years ago
keremwai
• 0
2
votes
3
replies
872
views
EnsDb.Rnorvegicus for Rnor6
annotation
db
reference
rnor6
updated 2.6 years ago by
Guido Hooiveld
★ 3.5k • written 2.6 years ago by
keremwai
• 0
0
votes
0
replies
628
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
5.9 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
2.0k
views
EdgeR: setting reference condition and design matrix headers
edgeR
reference
design matrix
multiple factor design
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
Ekarl2
▴ 80
0
votes
2
replies
634
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 13 months ago by
Michael Love
39k • written 13 months ago by
yampolsk
• 0
0
votes
0
replies
441
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
4.0 years ago
jlarsen728
• 0
0
votes
2
replies
808
views
Reference manual for rmr2 package
reference
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
Agaz Hussain Wani
▴ 260
7 results • Page
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Comment: transcript name mapping between human and mouse
by
Eric
• 0
It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Bernardo
• 0
Just did that, thank you for the suggestion.
Comment: Empty ChipQC Report
by
Okan
• 0
Hi, I have the same issue. Have you found any solution or any reason why this is happening?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Votes
Answer: transcript name mapping between human and mouse
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Volcano Plot in R
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
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