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2
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EnsDb.Rnorvegicus for Rnor6
annotation db reference rnor6
updated 17 months ago by ★ 3.1k • written 17 months ago by • 0
2
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2
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312
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Tximport missing values for group summarizing counts
tximport rat reference GTF salmon
17 months ago keremwai • 0
0
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1
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1.8k
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EdgeR: setting reference condition and design matrix headers
edgeR reference design matrix multiple factor design
updated 6.5 years ago by ★ 27k • written 6.5 years ago by ▴ 70
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2
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674
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Reference manual for rmr2 package
reference
updated 6.1 years ago by ★ 27k • written 6.1 years ago by ▴ 260
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Setting relevel with the JunctionSeq package
junctionseq relevel reference
4.8 years ago Assa Yeroslaviz ★ 1.5k
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Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation reference CNA TCGA
2.8 years ago jlarsen728 • 0
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Comment: interpretation complex design limma by dfrtyu • 0
Very many thanks for the reply! @ James MacDonald Indeed it is probably unnecessary to do ```g2v1=(group2_dead+group2_alive)``` hence t…
Answer: Design formula in DESeq2 by swbarnes2 ▴ 930
if sex is, like batch, just a 'nuisance' actor that you aren't really going to interrogate, but just want to include as a co-factor to be a…
Answer: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu by Mike Smith ★ 5.3k
This requires some refinement, but how about modifying the `knitr::knit_hooks` for "warnings" to search each warning for known patterns and…
Answer: readIDAT output to beadarray package input file by James W. MacDonald 58k
There's a [whole vignette about using beadarray to analyze at the bead level][1]. You might start there. [1]: http://www.bioconducto…
Answer: interpretation complex design limma by James W. MacDonald 58k
When you fit a linear model and make comparisons you are always computing the average for a group, and you make comparisons by calculating …
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Answer: interpretation complex design limma
How to properly sort GRanges?
A: How to properly sort GRanges?
Comment: Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a
Answer: Error in installing org.Hs.eg.db
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