Biostar Reference

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585

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tximport rat reference GTF salmon

2.6 years ago keremwai • 0

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872

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annotation db reference rnor6

updated 2.6 years ago by Guido Hooiveld ★ 3.5k • written 2.6 years ago by keremwai • 0

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628

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junctionseq relevel reference

5.9 years ago Assa Yeroslaviz ★ 1.5k

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2.0k

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edgeR reference design matrix multiple factor design

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Ekarl2 ▴ 80

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634

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sign FoldChange DESeq2 reference

updated 13 months ago by Michael Love 39k • written 13 months ago by yampolsk • 0

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441

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segmentation reference CNA TCGA

4.0 years ago jlarsen728 • 0

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808

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reference

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Agaz Hussain Wani ▴ 260

7 results • Page 1 of 1

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Comment: transcript name mapping between human and mouse by Eric • 0

It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Votes

Answer: transcript name mapping between human and mouse

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

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Teacher to Michael Love 39k

Teacher to James W. MacDonald 62k

Popular Question to Assa Yeroslaviz ★ 1.5k

Scholar to ATpoint ★ 2.0k