Bioconductor RegioneR

Showing : regioneR • reset

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1.4k

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annotatr regioneR gkmSVM

updated 12 months ago by Mahmoud • 0 • written 3.9 years ago by rohitsatyam102 ▴ 20

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1.1k

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regioneR granges iranges

updated 4.1 years ago by bernatgel ▴ 150 • written 4.5 years ago by Angel Liang • 0

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812

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regioneR

updated 5.1 years ago by bernatgel ▴ 150 • written 5.2 years ago by shoko • 0

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1.0k

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regioneR

5.4 years ago AlejandroMA • 0

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791

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regioneR

updated 5.5 years ago by bernatgel ▴ 150 • written 5.6 years ago by Miss Agnieszka Aleksandra Golicz ▴ 40

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769

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regioneR

updated 5.6 years ago by bernatgel ▴ 150 • written 5.6 years ago by Miss Agnieszka Aleksandra Golicz ▴ 40

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746

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regioner

6.4 years ago peds09 • 0

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970

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regioner permtest

6.6 years ago linuxborg2 • 0

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2.2k

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regioneR permTest

6.7 years ago • updated 6.6 years ago linuxborg2 • 0

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1.4k

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regioneR

updated 7.0 years ago by bernatgel ▴ 150 • written 7.0 years ago by gonzalpk ▴ 10

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3.5k

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regioner overlappingpeaks

updated 7.6 years ago by bernatgel ▴ 150 • written 7.6 years ago by tharveshliyakat ▴ 10

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1.3k

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regioneR

updated 7.9 years ago by bernatgel ▴ 150 • written 7.9 years ago by Vinicius Henrique da Silva ▴ 40

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1.3k

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shuffle regioner seqinr

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by Dimitris Polychronopoulos ▴ 80

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regioneR

updated 8.3 years ago by bgel ▴ 30 • written 8.3 years ago by andreucat91 • 0

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1.5k

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regioner

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by rcavalca ▴ 140

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1.1k

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genomicranges regioneR width

updated 8.8 years ago by bernatgel ▴ 150 • written 8.8 years ago by Ludo Pagie ▴ 40

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2.1k

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regioneR GRanges GCcontent

updated 9.0 years ago by bernatgel ▴ 150 • written 9.0 years ago by Dimitris Polychronopoulos ▴ 80

17 results • Page 1 of 1

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Votes

Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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