Showing : regioner • reset
6
votes
5
replies
3.1k
views
Error running the function permTest
regioner overlappingpeaks
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
2
votes
5
replies
1.9k
views
permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR permTest
6.1 years ago linuxborg2 • 0
6
votes
1
reply
1.8k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR GRanges GCcontent
updated 8.5 years ago by ▴ 150 • written 8.5 years ago by ▴ 80
2
votes
5
replies
1.4k
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 140
0
votes
1
reply
1.3k
views
regioneR: error when verbose=TRUE
regioneR
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by • 0
2
votes
1
reply
1.2k
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 7.4 years ago by ▴ 150 • written 7.4 years ago by ▴ 40
2
votes
1
reply
1.2k
views
RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle regioner seqinr
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 80
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 6 months ago by • 0 • written 3.4 years ago by ▴ 20
0
votes
1
reply
965
views
width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges regioneR width
updated 8.3 years ago by ▴ 150 • written 8.3 years ago by ▴ 40
0
votes
1
reply
915
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
updated 3.6 years ago by ▴ 150 • written 4.0 years ago by • 0
0
votes
3
replies
896
views
Replacement error in PermTest
regioneR
4.9 years ago AlejandroMA • 0
0
votes
0
replies
835
views
permTest plot Evobs bar moves and it should not
regioner permtest
6.1 years ago linuxborg2 • 0
0
votes
1
reply
684
views
behaviour of regioneR permTest function
regioneR
updated 4.6 years ago by ▴ 150 • written 4.7 years ago by • 0
0
votes
1
reply
661
views
Is localZScore function of regioneR mask-aware?
regioneR
updated 5.0 years ago by ▴ 150 • written 5.0 years ago by ▴ 40
0
votes
0
replies
658
views
overlapPermTest will not allow randomizing from MASKED hg19
regioner
5.9 years ago peds09 • 0
1
vote
1
reply
655
views
regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 5.0 years ago by ▴ 150 • written 5.0 years ago by ▴ 40
17 results • Page 1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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