Bioconductor Repeated measures

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1.1k

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deseq2 rnaseq repeated measures time series design formula

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by Dorien ▴ 10

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743

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deseq2 repeated measures

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by jperin • 0

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3.0k

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dream variancePartition limma differential expression repeated measures

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by hermidalc ▴ 20

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1.7k

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SVA deseq2 repeated measures

updated 5.2 years ago by Robert Castelo ★ 3.4k • written 5.2 years ago by sara.blocquiaux • 0

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2.6k

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limma rna-seq mixed model repeated measures

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by mikhael.manurung ▴ 280

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1.8k

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edgeR rnaseq repeated measures

updated 6.7 years ago by Ryan C. Thompson ★ 7.9k • written 6.7 years ago by wjh180 • 0

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4.4k

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deseq2 repeated measures time course

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Marion • 0

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5.5k

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LIMMA FACTORIAL REPEATED MEASURES differential gene expression

9.3 years ago • updated 9.2 years ago robert.maughan • 0

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946

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repeated measures

9.2 years ago PJ • 0

9 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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