Bioconductor Reproducibility

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deseq2 new version bioconductor software error reproducibility

8.4 years ago Daniel Elsner • 0

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3.0k

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reproducibility archive source code

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by brucbruc • 0

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1.6k

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archive reproducibility

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by robert.bruccoleri ▴ 10

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3.1k

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rsubread alignment reproducibility

8.5 years ago Isaac Virshup • 0

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1.1k

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reproducibility versions installing base-r

updated 5.0 years ago by Mike Smith ★ 6.6k • written 5.0 years ago by Yannick Wurm ▴ 40

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968

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bioconductor R reproducibility

8.4 years ago lwumd1400 • 0

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2.1k

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docker reproducibility

9.5 years ago anton.kratz ▴ 60

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) : …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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Supporter to bhanu.chandra1 • 0