Bioconductor Resultsnames

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DESeq2 resultsNames lfcShrink

updated 2.2 years ago by ATpoint ★ 4.5k • written 2.2 years ago by eve.olszanowski • 0

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resultsNames DESeq2 coefficient

3.6 years ago Jane ▴ 10

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resultsNames DESeq2

written 3.8 years ago by efratsh ▴ 10

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by Ricardo Rodrigues • 0

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deseq2 resultsnames batch effect contrast

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by pkachroo ▴ 10

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deseq2 DESeq2 resultsNames

7.3 years ago davichen ▴ 10

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deseq2 resultsnames

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by mrigaya.mehra ▴ 10

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deseq2 rnaseq resultsnames

7.6 years ago • updated 7.5 years ago zeynep.nenseth • 0

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DESeq deseq2 resultsnames

8.4 years ago akaever ▴ 30

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deseq2 resultsnames multifactorial design

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by Ira ▴ 10

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3.1k

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deseq2 relevel resultsNames multifactorial design

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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