Bioconductor Resultsnames

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DESeq2 resultsNames lfcShrink

updated 2.2 years ago by ATpoint ★ 4.5k • written 2.2 years ago by eve.olszanowski • 0

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resultsNames DESeq2 coefficient

3.5 years ago Jane ▴ 10

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830

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resultsNames DESeq2

written 3.8 years ago by efratsh ▴ 10

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by Ricardo Rodrigues • 0

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deseq2 resultsnames batch effect contrast

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by pkachroo ▴ 10

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deseq2 DESeq2 resultsNames

7.3 years ago davichen ▴ 10

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deseq2 resultsnames

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by mrigaya.mehra ▴ 10

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deseq2 rnaseq resultsnames

7.5 years ago zeynep.nenseth • 0

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DESeq deseq2 resultsnames

8.4 years ago • updated 8.3 years ago akaever ▴ 30

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deseq2 resultsnames multifactorial design

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by Ira ▴ 10

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3.1k

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deseq2 relevel resultsNames multifactorial design

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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Popular Question to Assa Yeroslaviz ★ 1.5k