Bioconductor Resultsnames

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DESeq2 resultsNames lfcShrink

updated 2.6 years ago by ATpoint ★ 4.7k • written 2.6 years ago by eve.olszanowski • 0

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2.6k

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resultsNames DESeq2 coefficient

3.9 years ago Jane ▴ 10

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898

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resultsNames DESeq2

written 4.2 years ago by efratsh ▴ 10

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1.1k

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Ricardo Rodrigues • 0

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1.4k

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deseq2 resultsnames batch effect contrast

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by pkachroo ▴ 10

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deseq2 DESeq2 resultsNames

7.7 years ago • updated 7.6 years ago davichen ▴ 10

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deseq2 resultsnames

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by mrigaya.mehra ▴ 10

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3.8k

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deseq2 rnaseq resultsnames

7.9 years ago zeynep.nenseth • 0

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4.5k

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DESeq deseq2 resultsnames

8.7 years ago akaever ▴ 30

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2.6k

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deseq2 resultsnames multifactorial design

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by Ira ▴ 10

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3.3k

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deseq2 relevel resultsNames multifactorial design

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Comment: deseq2 lfc shrinkage with few DEGs by Michael Love 43k

Agree with your edit.

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by Michael Love 43k

See above about my recommendation to collaborate with someone familiar with linear models represented in R. I have to limit my time on the …

Comment: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k

The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step. You don't need a con…

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Answer: Using TPM from tximport of Salmon output for singscore

Comment: deseq2 lfc shrinkage with few DEGs

Answer: DESEQ2 looking at main effects while controlling for a continuous variable

Use of clusterProfiler : Error in testForValidKeytype(x, keytype)

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

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