Bioconductor Ribosome profiling

Showing : ribosome profiling • reset

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989

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deseq2 differential translation ribosome profiling

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by katerinadouka91 • 0

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1.5k

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aligning ribosome profiling RNA-Seq

5.2 years ago Crispy • 0

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1.5k

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deseq2 ribosome profiling wald lrt

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by indrik.wijaya ▴ 20

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2.4k

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deseq2 sequencing ribosome profiling riboseq multiple factor design

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by kotcha.m ▴ 10

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3.2k

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deseq2 ribosome profiling

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by xiaozhuo ▴ 10

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1.3k

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R riboseqr ribosome profiling

6.8 years ago bsad • 0

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840

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riboprofiling ribosome profiling

7.2 years ago nicholsonangela7 • 0

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2.1k

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biomart bioconductor grangeslist cds ribosome profiling

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Walter F. Baumann ▴ 10

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2.4k

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deseq2 translation efficiency spikes ribosome profiling

8.1 years ago GFM ▴ 20

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1.8k

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riboseqr ribosome profiling

updated 8.7 years ago by Thomas J Hardcastle ▴ 180 • written 8.8 years ago by alper.celik • 0

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1.7k

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R riboseqr ribosome profiling

9.1 years ago ohtack9 • 0

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2.4k

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deseq2 linear model ribosome profiling stats

updated 9.3 years ago by Ryan C. Thompson ★ 7.9k • written 9.3 years ago by Jake ▴ 90

12 results • Page 1 of 1

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Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k

> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…

Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k

I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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