Showing : rnaseqpower • reset
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 4 months ago by • 0
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featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
5 months ago yasmin.hilliam ▴ 10
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Batch adjustment for cohort based RNA seq data
RNASeqPower removeBatchEffect cpm Batcheffect
5 months ago sukeshinik5 ▴ 20
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RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
15 months ago drewhaydensteele • 0
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Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 17 months ago by ▴ 780 • written 18 months ago by • 0
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower edgeR DifferentialExpression limma RNASeq
updated 22 months ago by 52k • written 22 months ago by • 0
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Typo in citation for RNASeqPower
RNASeqPower citation
2.7 years ago stephenjjohnson • 0
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How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.1 years ago by 52k • written 4.0 years ago by ▴ 50
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.1 years ago by ▴ 20 • written 9.1 years ago by • 0
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Depth or # of reads for RNASeqPower
rnaseqpower
10.4 years ago drnknmstrr • 0
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.1 years ago Guest User ★ 13k
11 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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