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rnaseqpower
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
3 months ago
drewhaydensteele
• 0
0
votes
1
reply
364
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 5 months ago by
Basti
▴ 750 • written 6 months ago by
Luke
• 0
1
vote
3
replies
731
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower
edgeR
DifferentialExpression
limma
RNASeq
updated 10 months ago by
Gordon Smyth
50k • written 11 months ago by
Sara
• 0
0
votes
0
replies
493
views
Typo in citation for RNASeqPower
RNASeqPower
citation
21 months ago
stephenjjohnson
• 0
0
votes
3
replies
1.7k
views
How to calculate coefficient of variation within group?
edgeR
limma
RNASeqPower
updated 2.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Ahdee
▴ 50
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.1 years ago by
m.van_iterson
▴ 20 • written 8.1 years ago by
roser.navarro
• 0
0
votes
1
reply
1.1k
views
Depth or # of reads for RNASeqPower
rnaseqpower
9.4 years ago
drnknmstrr
• 0
0
votes
0
replies
1.0k
views
Power Calculation of multiple factors design of RNA-sequencing study
edgeR
DESeq
RNASeqPower
edgeR
DESeq
RNASeqPower
10.1 years ago
Guest User
★ 13k
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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